Variant report

Variant	rs6895008
Chromosome Location	chr5:147209677-147209678
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7720576	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021356	chr5:147103627-147310531	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1033907	chr5:147109014-147309076	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv537916	chr5:147109014-147309076	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv933308	chr5:147173804-147269006	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147200000-147209800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:147200200-147211400	Weak transcription	Aorta	Aorta
3	chr5:147202000-147210000	Weak transcription	Colonic Mucosa	Colon
4	chr5:147206000-147211400	Active TSS	Fetal Stomach	stomach
5	chr5:147206000-147211600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr5:147207800-147210400	Enhancers	Fetal Lung	lung
7	chr5:147208000-147211400	Active TSS	Duodenum Mucosa	Duodenum
8	chr5:147208600-147211600	Active TSS	Stomach Mucosa	stomach
9	chr5:147208800-147209800	Enhancers	Liver	Liver
10	chr5:147209000-147211200	Active TSS	Fetal Intestine Small	intestine
11	chr5:147209000-147211400	Active TSS	Fetal Intestine Large	intestine
12	chr5:147209000-147211600	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr5:147209200-147210000	Weak transcription	Pancreas	Pancrea
14	chr5:147209200-147211200	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr5:147209200-147218400	Weak transcription	Gastric	stomach
16	chr5:147209600-147210400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:147209600-147210400	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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