Variant report

Variant	rs6895375
Chromosome Location	chr5:96075263-96075264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96069238..96072291-chr5:96073506..96076761,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153113	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs27035	1.00[EUR][1000 genomes]
rs61744247	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015173	chr5:95987366-96153392	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv830411	chr5:96045168-96187817	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv516293	chr5:96070205-96216387	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96042800-96076200	Weak transcription	GM12878-XiMat	blood
2	chr5:96051200-96076800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:96054800-96077200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:96057800-96076000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:96057800-96098600	Weak transcription	Fetal Brain Male	brain
6	chr5:96058000-96077200	Weak transcription	Small Intestine	intestine
7	chr5:96058000-96078200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:96062800-96081400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:96063000-96126200	Weak transcription	Brain Germinal Matrix	brain
10	chr5:96064600-96092600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:96066600-96076000	Weak transcription	Aorta	Aorta
12	chr5:96066600-96076000	Weak transcription	Gastric	stomach
13	chr5:96066600-96076000	Weak transcription	Spleen	Spleen
14	chr5:96066600-96076800	Weak transcription	Fetal Thymus	thymus
15	chr5:96066800-96077200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:96066800-96079400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr5:96067200-96076600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:96068200-96077200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr5:96068200-96095400	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr5:96068200-96100400	Strong transcription	Liver	Liver
21	chr5:96068400-96077400	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr5:96068400-96138200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr5:96068600-96130000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr5:96069200-96077200	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr5:96069400-96094000	Strong transcription	Fetal Muscle Leg	muscle
26	chr5:96069600-96094000	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr5:96069800-96077400	Strong transcription	Primary B cells from cord blood	blood
28	chr5:96070200-96077400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr5:96070200-96083400	Strong transcription	Duodenum Mucosa	Duodenum
30	chr5:96070200-96087800	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr5:96070200-96116400	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr5:96070400-96076800	Strong transcription	Fetal Intestine Large	intestine
33	chr5:96070400-96077200	Weak transcription	Stomach Mucosa	stomach
34	chr5:96070600-96079200	Strong transcription	Placenta	Placenta
35	chr5:96070800-96095400	Strong transcription	Primary B cells from peripheral blood	blood
36	chr5:96071000-96078400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr5:96071000-96112800	Strong transcription	Hela-S3	cervix
38	chr5:96071200-96077200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr5:96071200-96078600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr5:96071200-96085000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:96071200-96088000	Strong transcription	A549	lung
42	chr5:96071200-96094000	Strong transcription	HSMM	muscle
43	chr5:96071400-96078400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr5:96071400-96078600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr5:96071400-96078600	Weak transcription	Right Atrium	heart
46	chr5:96071400-96113000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr5:96071400-96126600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr5:96071600-96076200	Weak transcription	Fetal Heart	heart
49	chr5:96071600-96103200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr5:96071800-96076000	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links