Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10054039	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10073898	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10942621	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11742679	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs11744110	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs11747245	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs11957689	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12514684	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12523056	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs16869305	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs17633569	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1995774	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1995775	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3105793	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4916831	1.00[JPT][hapmap]
rs4916833	1.00[JPT][hapmap]
rs6859871	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6860068	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6860111	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6865241	0.87[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs6865267	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6871445	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs6879563	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6881586	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs6881722	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6883495	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6891672	0.81[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv517049	chr5:90003131-90262475	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv462247	chr5:90249900-90298632	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv598928	chr5:90249900-90298632	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90230400-90265200	Weak transcription	K562	blood
2	chr5:90236800-90263200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:90242600-90261000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:90253000-90265200	Weak transcription	Fetal Brain Female	brain
5	chr5:90253200-90258000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:90253800-90258000	Weak transcription	HUVEC	blood vessel
7	chr5:90257200-90257600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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