Variant report

Variant	rs6896204
Chromosome Location	chr5:147393513-147393514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10036261	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10074782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491341	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10491342	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948836	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11950029	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11951613	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11951614	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11952442	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11954011	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955612	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11956309	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957191	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11957744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958071	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11958866	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11960620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12332673	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1363718	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1363719	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1363720	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1422985	0.83[CHB][hapmap];0.84[EUR][1000 genomes]
rs1422986	0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs17107575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107650	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107665	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107672	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107673	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107676	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107680	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17107705	0.92[CHB][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17599528	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17641707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17718366	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17718385	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17718403	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17718420	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17718511	0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs17718535	0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs17718737	0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs17774892	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17774947	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17775044	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17775080	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17775092	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17775104	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17860502	0.84[EUR][1000 genomes]
rs1833769	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2032866	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2052530	0.97[EUR][1000 genomes]
rs2112768	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2112769	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2287774	0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs2303069	0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs3752677	0.84[EUR][1000 genomes]
rs3777138	0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs4705050	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705051	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4705052	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4705053	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4705219	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4705220	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5014785	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56714312	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56945766	0.84[EUR][1000 genomes]
rs57608902	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58212044	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58237290	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58359628	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58789871	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58923221	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59133736	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59140447	0.84[EUR][1000 genomes]
rs59484357	0.92[AFR][1000 genomes]
rs59900981	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60978485	0.84[EUR][1000 genomes]
rs61547850	0.84[EUR][1000 genomes]
rs61612041	0.84[EUR][1000 genomes]
rs6872206	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6873949	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6881420	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6891750	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6892970	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73269110	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73269112	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73269121	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73271110	0.84[EUR][1000 genomes]
rs73794613	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73794614	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73794615	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73794633	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7703112	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705278	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7706528	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7714069	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714855	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7719473	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7721002	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727019	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733255	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs953310	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs984836	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885178	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1033838	chr5:147360521-147484014	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147386400-147394000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:147386400-147400000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:147388600-147401800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:147389200-147394400	Enhancers	Hela-S3	cervix
5	chr5:147390600-147394600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:147391000-147394400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:147391000-147394400	Enhancers	HMEC	breast
8	chr5:147391000-147394400	Enhancers	NHEK	skin
9	chr5:147391600-147400800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr5:147391800-147401600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:147392600-147396200	Weak transcription	Psoas Muscle	Psoas
12	chr5:147393200-147394200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:147393400-147393800	Enhancers	Esophagus	oesophagus

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