Variant report

Variant	rs6896591
Chromosome Location	chr5:118773814-118773815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030717	chr5:118709310-118836951	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv4974	chr5:118750259-118795376	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2334240	chr5:118773603-118774008	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
6	esv3450209	chr5:118773640-118774022	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118769800-118774200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:118771400-118774800	Weak transcription	Stomach Mucosa	stomach
3	chr5:118771600-118774000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:118771600-118774600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:118771600-118774800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr5:118771800-118774000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:118771800-118774400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:118773000-118774000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:118773000-118774000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:118773000-118774400	Enhancers	Primary hematopoietic stem cells	blood
11	chr5:118773000-118774400	Enhancers	K562	blood
12	chr5:118773000-118774800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr5:118773600-118774400	Enhancers	HepG2	liver
14	chr5:118773600-118775600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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