Variant report

Variant	rs6896981
Chromosome Location	chr5:14828004-14828005
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14826927..14829271-chr5:14829445..14831346,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs152761	1.00[MEX][hapmap]
rs152785	1.00[MEX][hapmap]
rs7711870	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv948447	chr5:14771247-14852610	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830212	chr5:14784197-14966683	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	esv2753381	chr5:14814900-14882800	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	esv2755533	chr5:14814900-14882800	Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	esv2755538	chr5:14814900-14927500	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14811600-14843800	Weak transcription	Fetal Intestine Large	intestine
2	chr5:14811600-14861200	Weak transcription	Colonic Mucosa	Colon
3	chr5:14812000-14849600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:14814000-14835000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr5:14814400-14842200	Weak transcription	Thymus	Thymus
6	chr5:14817400-14829600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:14817400-14842400	Weak transcription	Lung	lung
8	chr5:14817800-14830400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:14818000-14833000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:14819600-14830600	Weak transcription	HSMM	muscle
11	chr5:14819600-14835400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr5:14820000-14830400	Weak transcription	Right Ventricle	heart
13	chr5:14820000-14830800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr5:14820600-14854800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr5:14820800-14851800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:14821200-14829000	Weak transcription	Fetal Stomach	stomach
17	chr5:14821200-14848600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr5:14822000-14838000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr5:14822200-14830000	Weak transcription	HMEC	breast
20	chr5:14822400-14830200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:14822400-14831200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:14822800-14830400	Weak transcription	Brain Angular Gyrus	brain
23	chr5:14822800-14830600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr5:14823000-14835200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr5:14823800-14830200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:14824000-14830200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr5:14824800-14869600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr5:14825000-14830400	Weak transcription	Gastric	stomach
29	chr5:14825200-14829400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr5:14825200-14829400	Weak transcription	Fetal Brain Female	brain
31	chr5:14825200-14830800	Weak transcription	Brain Anterior Caudate	brain
32	chr5:14825200-14833000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr5:14825400-14829600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr5:14825400-14830200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:14825400-14830800	Weak transcription	Brain Hippocampus Middle	brain
36	chr5:14825400-14830800	Weak transcription	Brain Substantia Nigra	brain
37	chr5:14825400-14831200	Weak transcription	Fetal Muscle Leg	muscle
38	chr5:14825600-14831000	Weak transcription	Aorta	Aorta
39	chr5:14826400-14828800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr5:14826600-14828200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr5:14826600-14828200	Strong transcription	Osteobl	bone
42	chr5:14826600-14841800	Weak transcription	HepG2	liver
43	chr5:14826800-14830800	Strong transcription	Fetal Intestine Small	intestine
44	chr5:14827000-14828400	Strong transcription	Primary T cells from cord blood	blood
45	chr5:14827000-14828400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr5:14827000-14828600	Enhancers	Pancreas	Pancrea
47	chr5:14827000-14831400	Enhancers	Fetal Brain Male	brain
48	chr5:14827200-14832200	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr5:14827400-14828200	Enhancers	Liver	Liver
50	chr5:14827400-14829000	Enhancers	Primary T helper cells PMA-I stimulated	--

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