Variant report

Variant	rs6897683
Chromosome Location	chr5:167462967-167462968
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10866621	0.91[CHB][hapmap]
rs11952245	0.82[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1347135	0.91[CHB][hapmap]
rs1347136	0.91[CHB][hapmap]
rs17069705	0.82[CHB][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.89[LWK][hapmap];0.97[MKK][hapmap];0.90[YRI][hapmap]
rs1862418	0.86[CHB][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs247990	0.81[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs247994	0.89[GIH][hapmap];0.81[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.99[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3860782	0.91[CHB][hapmap]
rs918527	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517414	chr5:167462765-167465018	Weak transcription Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6897683	FBXW11	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167443800-167466000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167447600-167483000	Weak transcription	Right Atrium	heart
3	chr5:167450600-167466600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:167450800-167474000	Weak transcription	Left Ventricle	heart
5	chr5:167454600-167463000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:167455200-167474600	Weak transcription	NHEK	skin
7	chr5:167457400-167469000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:167457600-167463800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:167457800-167465200	Weak transcription	Right Ventricle	heart
10	chr5:167458200-167474200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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