Variant report

Variant	rs6898335
Chromosome Location	chr5:146346200-146346201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:145945006..145946414-chr5:146345321..146346218,7	MCF-7	breast:
2	chr5:145921765..145922437-chr5:146345649..146346275,3	MCF-7	breast:
3	chr5:145912515..145913125-chr5:146345252..146346326,5	K562	blood:
4	chr5:145921733..145922459-chr5:146345492..146346272,2	K562	blood:
5	chr5:146041750..146042359-chr5:146345292..146346236,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11167949	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11953078	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2086375	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2127569	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2400235	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4705124	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705452	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705453	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146342800-146347200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:146344200-146347800	Enhancers	Brain Hippocampus Middle	brain
3	chr5:146344800-146346200	Enhancers	Brain Anterior Caudate	brain
4	chr5:146345000-146347800	Enhancers	Brain Cingulate Gyrus	brain
5	chr5:146345000-146348000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr5:146345000-146348000	Enhancers	Brain Substantia Nigra	brain
7	chr5:146345200-146346200	Enhancers	Fetal Brain Male	brain
8	chr5:146345200-146347800	Enhancers	Brain Angular Gyrus	brain
9	chr5:146345400-146346200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:146345400-146346200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:146345400-146346200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr5:146345400-146346200	Enhancers	Ovary	ovary
13	chr5:146345400-146346200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr5:146345400-146346200	Enhancers	Rectal Smooth Muscle	rectum
15	chr5:146345400-146347600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr5:146345800-146346200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr5:146345800-146346800	Weak transcription	Colon Smooth Muscle	Colon
18	chr5:146346000-146347000	Weak transcription	Left Ventricle	heart
19	chr5:146346000-146347200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:146346200-146346600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:146346200-146347200	Weak transcription	Ovary	ovary
22	chr5:146346200-146365600	Weak transcription	Brain Anterior Caudate	brain

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