Variant report

Variant	rs6898589
Chromosome Location	chr5:7961941-7961942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:54219998..54220671-chr5:7961911..7962788,2	Hela-S3	cervix:

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10055324	0.82[ASN][1000 genomes]
rs10055463	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1011918	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10474822	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10512939	0.82[ASN][1000 genomes]
rs11739188	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11739277	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11739918	0.82[ASN][1000 genomes]
rs11740325	0.82[ASN][1000 genomes]
rs12514384	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1466925	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16879633	0.82[ASN][1000 genomes]
rs2128262	0.82[ASN][1000 genomes]
rs2134586	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2170499	0.82[ASN][1000 genomes]
rs2170500	0.82[ASN][1000 genomes]
rs2170501	0.82[ASN][1000 genomes]
rs4479815	0.81[ASN][1000 genomes]
rs6555508	0.81[ASN][1000 genomes]
rs6555509	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6866880	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6868340	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6868766	0.82[ASN][1000 genomes]
rs6884685	0.82[ASN][1000 genomes]
rs6889013	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6893647	0.82[ASN][1000 genomes]
rs6894466	0.82[ASN][1000 genomes]
rs7448905	0.82[ASN][1000 genomes]
rs765611	0.82[ASN][1000 genomes]
rs7706004	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7719055	0.82[ASN][1000 genomes]
rs7719216	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7722902	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7723106	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7726545	0.82[ASN][1000 genomes]
rs7728958	0.82[ASN][1000 genomes]
rs7729849	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7730786	0.82[ASN][1000 genomes]
rs9313215	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9313216	0.82[ASN][1000 genomes]
rs9763747	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv597005	chr5:7860404-8093077	Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv427707	chr5:7866234-7966019	Strong transcription Active TSS Genic enhancers Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv969198	chr5:7954686-7963307	Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6898589	MTRR	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:7961000-7962400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:7961600-7962000	Enhancers	Ovary	ovary

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