Variant report

Variant	rs6899539
Chromosome Location	chr6:85821407-85821408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4707124	0.85[ASN][1000 genomes]
rs6901432	0.85[ASN][1000 genomes]
rs9450165	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85819800-85821800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:85820000-85822000	Enhancers	Brain Germinal Matrix	brain
3	chr6:85820400-85823400	Enhancers	Osteobl	bone
4	chr6:85820600-85821600	Enhancers	Fetal Brain Male	brain
5	chr6:85821000-85823400	Weak transcription	Fetal Brain Female	brain
6	chr6:85821200-85821600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:85821200-85821600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:85821200-85821800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:85821200-85821800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:85821200-85821800	Enhancers	Colon Smooth Muscle	Colon
11	chr6:85821200-85821800	Enhancers	Ovary	ovary
12	chr6:85821400-85821600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:85821400-85821800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:85821400-85822800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:85821400-85822800	Enhancers	NH-A	brain
16	chr6:85821400-85823400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:85821400-85823400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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