Variant report

Variant	rs6900010
Chromosome Location	chr6:133143247-133143248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:133141835..133144313-chr6:133156927..133159674,3	K562	blood:
2	chr6:133142358..133145641-chr6:133228438..133230524,3	K562	blood:
3	chr6:133141421..133143505-chr6:133285598..133287166,2	MCF-7	breast:
4	chr6:133111344..133113707-chr6:133142113..133144354,2	K562	blood:
5	chr6:133093368..133095334-chr6:133141299..133145047,3	K562	blood:
6	chr6:133140710..133143536-chr6:133169760..133172712,2	K562	blood:
7	chr6:133142048..133144415-chr6:133161174..133163996,2	MCF-7	breast:
8	chr6:133008525..133010705-chr6:133141120..133143788,2	K562	blood:
9	chr6:133142164..133143821-chr6:133206466..133209266,2	MCF-7	breast:
10	chr6:133139563..133143378-chr6:133869645..133873437,4	K562	blood:
11	chr6:133142071..133143902-chr6:133355082..133357821,2	MCF-7	breast:
12	chr6:133140291..133143900-chr6:133848629..133850657,3	MCF-7	breast:
13	chr6:133143184..133145778-chr6:133351555..133353623,2	K562	blood:
14	chr6:133140672..133145394-chr6:133829879..133833202,4	K562	blood:
15	chr6:133100929..133103671-chr6:133142640..133144601,2	K562	blood:
16	chr6:133142863..133144465-chr9:131937930..131940573,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000268050	Chromatin interaction
ENSG00000227954	Chromatin interaction
ENSG00000188483	Chromatin interaction
ENSG00000238059	Chromatin interaction
ENSG00000204055	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10080705	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6899535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6923611	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6942246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9321368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9483503	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493442	1.00[EUR][1000 genomes]
rs9493448	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9493495	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv886676	chr6:133111706-133168582	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	esv1806734	chr6:133125643-133168582	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133137200-133145400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:133137800-133143600	Weak transcription	Right Atrium	heart
3	chr6:133138400-133144400	Weak transcription	Stomach Mucosa	stomach
4	chr6:133138800-133144400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:133139400-133143400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:133139400-133146400	Weak transcription	Psoas Muscle	Psoas
7	chr6:133139600-133143400	Weak transcription	Esophagus	oesophagus
8	chr6:133139600-133144200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:133139600-133145400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:133139800-133145400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:133140600-133143600	Weak transcription	Pancreas	Pancrea
12	chr6:133140800-133144400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:133140800-133153800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:133141000-133143400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:133141000-133143400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:133141000-133143600	Weak transcription	Aorta	Aorta
17	chr6:133141000-133143800	Weak transcription	Ovary	ovary
18	chr6:133141000-133144000	Weak transcription	Fetal Intestine Small	intestine
19	chr6:133141000-133144200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:133141000-133144200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:133141000-133144200	Weak transcription	Brain Anterior Caudate	brain
22	chr6:133141000-133144200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:133141200-133143600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:133141200-133143600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:133141200-133143600	Weak transcription	Spleen	Spleen
26	chr6:133141200-133144000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:133141200-133144200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:133141200-133144200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:133141200-133144200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:133141200-133144200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:133141200-133144400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:133141200-133144400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:133141200-133145600	Weak transcription	Liver	Liver
34	chr6:133141200-133145600	Weak transcription	HepG2	liver
35	chr6:133141400-133143800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:133141400-133144000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:133141400-133144200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:133141400-133144200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr6:133141400-133144200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:133141400-133144200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr6:133141400-133145400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:133141400-133145400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:133141400-133145400	Weak transcription	Brain Hippocampus Middle	brain
44	chr6:133141400-133145400	Weak transcription	Colon Smooth Muscle	Colon
45	chr6:133141400-133145400	Weak transcription	Small Intestine	intestine
46	chr6:133141400-133145600	Weak transcription	Adipose Nuclei	Adipose
47	chr6:133141400-133151800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:133141600-133143800	Weak transcription	Fetal Stomach	stomach
49	chr6:133141600-133143800	Weak transcription	Fetal Thymus	thymus
50	chr6:133141600-133144200	Weak transcription	Primary B cells from peripheral blood	blood

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