Variant report

Variant	rs6900501
Chromosome Location	chr6:132724116-132724117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1000848	0.86[ASN][1000 genomes]
rs1000849	0.85[ASN][1000 genomes]
rs12660839	0.85[ASN][1000 genomes]
rs12663764	0.86[ASN][1000 genomes]
rs1338938	0.85[ASN][1000 genomes]
rs1538307	0.85[ASN][1000 genomes]
rs2153175	0.85[ASN][1000 genomes]
rs2185185	0.85[ASN][1000 genomes]
rs2211095	0.82[ASN][1000 genomes]
rs2327242	0.85[ASN][1000 genomes]
rs2876186	0.85[ASN][1000 genomes]
rs2876187	0.83[ASN][1000 genomes]
rs4377800	0.82[ASN][1000 genomes]
rs4489176	0.83[ASN][1000 genomes]
rs4515403	0.83[ASN][1000 genomes]
rs4529319	0.82[ASN][1000 genomes]
rs4897580	0.83[ASN][1000 genomes]
rs6569796	0.82[ASN][1000 genomes]
rs6921325	0.83[ASN][1000 genomes]
rs6922502	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6923916	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6937815	0.83[ASN][1000 genomes]
rs6938427	0.83[ASN][1000 genomes]
rs6942368	0.81[ASN][1000 genomes]
rs73776207	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7450274	0.85[ASN][1000 genomes]
rs7743007	0.85[ASN][1000 genomes]
rs7743456	0.85[ASN][1000 genomes]
rs7750935	0.82[ASN][1000 genomes]
rs7754992	0.83[ASN][1000 genomes]
rs7757469	0.82[ASN][1000 genomes]
rs7757641	0.82[ASN][1000 genomes]
rs7770281	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7770326	0.82[ASN][1000 genomes]
rs8180540	0.82[ASN][1000 genomes]
rs9375888	0.83[ASN][1000 genomes]
rs9385605	0.85[ASN][1000 genomes]
rs9388994	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9388995	0.83[ASN][1000 genomes]
rs9399023	0.84[ASN][1000 genomes]
rs9399027	0.82[ASN][1000 genomes]
rs9402405	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830811	chr6:132623160-132787539	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886675	chr6:132683762-132730947	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604668	chr6:132687248-132731358	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132723200-132724200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:132723400-132724200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:132723400-132724400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:132723400-132724600	Weak transcription	GM12878-XiMat	blood
5	chr6:132723400-132725000	Weak transcription	NHLF	lung
6	chr6:132723400-132725200	Weak transcription	NH-A	brain
7	chr6:132723400-132725600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:132723400-132725800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:132723400-132726000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:132723400-132726000	Weak transcription	HSMM	muscle
11	chr6:132723400-132726600	Enhancers	NHDF-Ad	bronchial
12	chr6:132723600-132725400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:132723800-132724400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:132724000-132724600	Active TSS	Fetal Kidney	kidney

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