Variant report

Variant	rs6900571
Chromosome Location	chr6:13461363-13461364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13459869..13463008-chr6:13572189..13575188,3	MCF-7	breast:
2	chr6:13461316..13464526-chr6:13474276..13478535,4	MCF-7	breast:
3	chr6:13458780..13460333-chr6:13460354..13463119,2	MCF-7	breast:
4	chr6:13458838..13461788-chr6:13485026..13487935,2	MCF-7	breast:
5	chr6:13460797..13463308-chr6:13464460..13467196,3	K562	blood:
6	chr6:13453259..13455801-chr6:13460525..13463218,2	K562	blood:

Variant related genes	Relation type
ENSG00000145990	Chromatin interaction
ENSG00000237786	Chromatin interaction
ENSG00000124523	Chromatin interaction
ENSG00000187461	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13436985	1.00[AMR][1000 genomes]
rs1529446	1.00[AMR][1000 genomes]
rs1529447	1.00[AMR][1000 genomes]
rs28407076	1.00[AMR][1000 genomes]
rs580566	1.00[AMR][1000 genomes]
rs58916275	1.00[AMR][1000 genomes]
rs6911516	1.00[AMR][1000 genomes]
rs73723716	1.00[AMR][1000 genomes]
rs73725837	1.00[AMR][1000 genomes]
rs7751772	1.00[AMR][1000 genomes]
rs7760365	1.00[AMR][1000 genomes]
rs9463815	1.00[AMR][1000 genomes]
rs9463817	1.00[AMR][1000 genomes]
rs9474268	1.00[AMR][1000 genomes]
rs9474275	1.00[AMR][1000 genomes]
rs9474283	1.00[AMR][1000 genomes]
rs9474287	1.00[AMR][1000 genomes]
rs9474288	1.00[AMR][1000 genomes]
rs9474289	1.00[AMR][1000 genomes]
rs9474290	1.00[AMR][1000 genomes]
rs9474292	1.00[AMR][1000 genomes]
rs9474296	1.00[AMR][1000 genomes]
rs9474297	1.00[AMR][1000 genomes]
rs9474298	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv462640	chr6:13426539-13519434	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv600994	chr6:13426539-13519434	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv470802	chr6:13441424-13519371	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13438600-13462200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:13445600-13461800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:13449000-13461800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:13452000-13462000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:13452200-13483400	Weak transcription	Gastric	stomach
6	chr6:13453400-13461800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:13454400-13461800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:13454400-13485000	Weak transcription	Colonic Mucosa	Colon
9	chr6:13455200-13462600	Weak transcription	Stomach Mucosa	stomach
10	chr6:13455200-13466600	Weak transcription	Pancreas	Pancrea
11	chr6:13455200-13484400	Weak transcription	Small Intestine	intestine
12	chr6:13455200-13484600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:13455400-13462000	Weak transcription	Esophagus	oesophagus
14	chr6:13455400-13462600	Weak transcription	HSMM	muscle
15	chr6:13455400-13463200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:13455400-13481000	Weak transcription	HUVEC	blood vessel
17	chr6:13455600-13462000	Weak transcription	NHDF-Ad	bronchial
18	chr6:13455800-13462000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:13456200-13461400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:13456200-13461400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr6:13456200-13461400	Weak transcription	Aorta	Aorta
22	chr6:13456200-13461400	Weak transcription	Lung	lung
23	chr6:13456200-13461600	Weak transcription	Primary T cells from cord blood	blood
24	chr6:13456200-13462000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:13456200-13462000	Weak transcription	Dnd41	blood
26	chr6:13456200-13463000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:13456200-13463000	Weak transcription	Fetal Brain Female	brain
28	chr6:13456200-13464400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:13456200-13466200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:13456400-13461600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:13456400-13461800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:13456600-13467200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:13457200-13462000	Weak transcription	Thymus	Thymus
34	chr6:13457400-13461400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr6:13457400-13461600	Weak transcription	Primary B cells from cord blood	blood
36	chr6:13457400-13462000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr6:13457600-13461400	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr6:13457600-13461400	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:13457600-13461800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:13457800-13461600	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:13457800-13462200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:13457800-13462400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:13458200-13461600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:13458200-13462000	Weak transcription	Adipose Nuclei	Adipose
45	chr6:13458200-13462200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:13458200-13462200	Weak transcription	Fetal Brain Male	brain
47	chr6:13458200-13462200	Weak transcription	HMEC	breast
48	chr6:13458200-13462600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:13458200-13462600	Weak transcription	NH-A	brain
50	chr6:13458200-13462800	Weak transcription	Fetal Muscle Leg	muscle

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