Variant report

Variant	rs6900898
Chromosome Location	chr6:128624569-128624570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12193722	0.94[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055571	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055576	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055579	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055581	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055586	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055587	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17055614	0.88[YRI][hapmap];0.85[AMR][1000 genomes]
rs17055622	1.00[AMR][1000 genomes]
rs57369971	1.00[AMR][1000 genomes]
rs57456285	1.00[AMR][1000 genomes]
rs6905271	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6914327	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6928070	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740786	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7741119	0.94[YRI][hapmap];1.00[AMR][1000 genomes]
rs7744979	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746709	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7751608	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771803	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv970667	chr6:128622520-128630617	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128593000-128631600	Weak transcription	Left Ventricle	heart
2	chr6:128597800-128625000	Weak transcription	HSMM	muscle
3	chr6:128602400-128632400	Weak transcription	Pancreas	Pancrea
4	chr6:128603000-128642800	Weak transcription	Fetal Intestine Large	intestine
5	chr6:128604400-128630600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:128604400-128633200	Weak transcription	Fetal Thymus	thymus
7	chr6:128605800-128627400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:128605800-128631200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:128606200-128630600	Weak transcription	Fetal Heart	heart
10	chr6:128609000-128646000	Weak transcription	NH-A	brain
11	chr6:128610800-128643200	Weak transcription	NHEK	skin
12	chr6:128612800-128630400	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:128613200-128640800	Weak transcription	HepG2	liver
14	chr6:128621800-128649000	Weak transcription	HSMMtube	muscle
15	chr6:128622200-128628800	Weak transcription	NHDF-Ad	bronchial
16	chr6:128622200-128631400	Weak transcription	Fetal Intestine Small	intestine
17	chr6:128623800-128624600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:128623800-128625400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:128624000-128624600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:128624000-128626000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:128624200-128625200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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