Variant report

Variant	rs6901062
Chromosome Location	chr6:145100672-145100673
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11155373	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs12173916	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4243474	0.87[EUR][1000 genomes]
rs4272231	0.87[EUR][1000 genomes]
rs4385333	0.87[EUR][1000 genomes]
rs4896747	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62427232	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6927442	0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6939586	0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7742259	0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7758369	0.87[EUR][1000 genomes]
rs9373427	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9376854	0.90[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376859	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403593	0.83[EUR][1000 genomes]
rs9791320	0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1021098	chr6:145017386-145106441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145040000-145114600	Weak transcription	NHLF	lung
2	chr6:145046000-145122200	Weak transcription	Colonic Mucosa	Colon
3	chr6:145047600-145115000	Weak transcription	Esophagus	oesophagus
4	chr6:145047600-145115000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:145066200-145126200	Weak transcription	Stomach Mucosa	stomach
6	chr6:145067800-145115800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr6:145068800-145115000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:145069800-145101800	Weak transcription	Aorta	Aorta
9	chr6:145072200-145101800	Weak transcription	Fetal Intestine Large	intestine
10	chr6:145073200-145105400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:145075000-145108800	Strong transcription	Primary B cells from cord blood	blood
12	chr6:145080000-145115000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:145084000-145155800	Weak transcription	Right Ventricle	heart
14	chr6:145084200-145101000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:145085400-145119000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:145085800-145134800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:145086800-145115000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:145087400-145115000	Weak transcription	Gastric	stomach
19	chr6:145088000-145102000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:145089600-145138400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:145090000-145136800	Weak transcription	Fetal Heart	heart
22	chr6:145090400-145115000	Weak transcription	Brain Anterior Caudate	brain
23	chr6:145090800-145115400	Weak transcription	Fetal Brain Male	brain
24	chr6:145091000-145105200	Weak transcription	HSMM	muscle
25	chr6:145091000-145107800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:145091000-145107800	Weak transcription	Ovary	ovary
27	chr6:145091000-145114400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:145091000-145114400	Weak transcription	NHDF-Ad	bronchial
29	chr6:145091000-145115000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:145091000-145115000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr6:145091000-145145000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:145091200-145117200	Weak transcription	Psoas Muscle	Psoas
33	chr6:145093400-145103400	Strong transcription	Primary B cells from peripheral blood	blood
34	chr6:145093400-145119800	Weak transcription	Fetal Intestine Small	intestine
35	chr6:145093800-145114800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr6:145094400-145136800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr6:145095000-145114800	Weak transcription	Placenta	Placenta
38	chr6:145095000-145119000	Weak transcription	NH-A	brain
39	chr6:145095200-145115400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:145095200-145118800	Weak transcription	GM12878-XiMat	blood
41	chr6:145095800-145101800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:145096000-145118600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:145096600-145105400	Weak transcription	Fetal Lung	lung
44	chr6:145096800-145114600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:145096800-145114800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr6:145096800-145118600	Weak transcription	HUVEC	blood vessel
47	chr6:145097000-145105000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr6:145097200-145114600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr6:145097400-145115000	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:145097600-145108000	Weak transcription	Fetal Kidney	kidney

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