Variant report

Variant	rs6901336
Chromosome Location	chr6:144985158-144985159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144975553..144978023-chr6:144984205..144986983,2	K562	blood:
2	chr6:144983668..144985899-chr6:144987093..144989829,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11155369	1.00[YRI][hapmap]
rs12198720	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv604822	chr6:144968195-145001887	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1032838	chr6:144978504-145110121	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144977800-144985400	Weak transcription	Gastric	stomach
2	chr6:144978800-144988400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr6:144978800-144989800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:144979800-144985800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr6:144980800-144989200	Weak transcription	Left Ventricle	heart
6	chr6:144981200-144986200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:144981200-144987000	Weak transcription	Spleen	Spleen
8	chr6:144981200-144996400	Weak transcription	Pancreas	Pancrea
9	chr6:144981200-145031000	Weak transcription	Placenta	Placenta
10	chr6:144981400-144985400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:144982000-144986600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:144982000-144987000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:144982000-144987800	Weak transcription	Adipose Nuclei	Adipose
14	chr6:144982000-144996200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:144982200-144987000	Weak transcription	NHDF-Ad	bronchial
16	chr6:144982600-144986800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:144982600-144986800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:144982600-144988000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:144982600-144996200	Weak transcription	HSMM	muscle
20	chr6:144982800-144986200	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:144982800-144987000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr6:144982800-144987000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:144982800-144987200	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:144982800-144992200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:144982800-145010000	Weak transcription	Fetal Stomach	stomach
26	chr6:144983000-144985600	Weak transcription	A549	lung
27	chr6:144983000-144987000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:144983000-144987000	Weak transcription	Fetal Lung	lung
29	chr6:144983000-144992600	Weak transcription	HSMMtube	muscle
30	chr6:144983000-145024600	Weak transcription	Fetal Kidney	kidney
31	chr6:144983400-144985400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
32	chr6:144983600-144985600	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr6:144983800-144985200	Weak transcription	Fetal Intestine Large	intestine
34	chr6:144983800-144987000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr6:144983800-144987000	Weak transcription	Fetal Intestine Small	intestine
36	chr6:144984200-144985200	Active TSS	Rectal Mucosa Donor 29	rectum
37	chr6:144984400-144985200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:144984400-144985600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:144984400-144986200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr6:144984400-144987200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr6:144984400-144987200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr6:144984400-144988000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr6:144984400-144988000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr6:144984600-144985200	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr6:144984600-144987200	Enhancers	Dnd41	blood
46	chr6:144984600-144987400	Enhancers	HepG2	liver
47	chr6:144984800-144985200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr6:144984800-144985400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr6:144984800-144985400	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr6:144984800-144985400	Enhancers	Small Intestine	intestine

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