Variant report

Variant	rs6901591
Chromosome Location	chr6:56253469-56253470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56346622	1.00[AMR][1000 genomes]
rs57002243	1.00[AMR][1000 genomes]
rs57085536	1.00[AMR][1000 genomes]
rs57858990	1.00[AMR][1000 genomes]
rs59478611	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60141508	1.00[AMR][1000 genomes]
rs60490077	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73450945	1.00[AMR][1000 genomes]
rs73450955	1.00[AMR][1000 genomes]
rs73457817	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73457822	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73457824	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73457833	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745630	1.00[AMR][1000 genomes]
rs73745650	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56247400-56263600	Weak transcription	Small Intestine	intestine
2	chr6:56251600-56253600	Enhancers	Fetal Intestine Large	intestine
3	chr6:56251600-56253600	Enhancers	Fetal Intestine Small	intestine
4	chr6:56251600-56253600	Enhancers	Rectal Smooth Muscle	rectum
5	chr6:56251600-56253600	Enhancers	Stomach Mucosa	stomach
6	chr6:56251600-56253800	Enhancers	Liver	Liver
7	chr6:56252200-56253600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:56252800-56253800	Enhancers	HepG2	liver
9	chr6:56253000-56282600	Weak transcription	Aorta	Aorta
10	chr6:56253200-56258800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:56253400-56253800	Enhancers	Hela-S3	cervix
12	chr6:56253400-56257000	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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