Variant report

Variant	rs6903457
Chromosome Location	chr6:130936406-130936407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17828460	0.82[AMR][1000 genomes]
rs17829411	0.90[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv427767	chr6:130875056-131008620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6903457	LOC285735	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130932800-130938800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:130935400-130936600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:130935600-130937000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:130935800-130936600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:130935800-130936800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:130935800-130936800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:130935800-130937000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:130936000-130937000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:130936200-130936600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:130936400-130936800	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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