Variant report

Variant	rs6904291
Chromosome Location	chr6:144685731-144685732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1080022	1.00[JPT][hapmap]
rs11965388	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2223427	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2502641	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58104509	0.83[ASN][1000 genomes]
rs58108287	0.83[ASN][1000 genomes]
rs58231767	0.83[ASN][1000 genomes]
rs59862970	0.83[ASN][1000 genomes]
rs61269020	0.83[ASN][1000 genomes]
rs6570623	0.83[ASN][1000 genomes]
rs6901521	1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909044	1.00[JPT][hapmap]
rs73594958	0.83[ASN][1000 genomes]
rs73594967	0.83[ASN][1000 genomes]
rs7746584	0.83[ASN][1000 genomes]
rs7746600	0.83[ASN][1000 genomes]
rs7753308	0.97[AFR][1000 genomes]
rs7763097	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7765364	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144663200-144685800	Weak transcription	Brain Substantia Nigra	brain
2	chr6:144665400-144696400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:144670800-144691200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:144671200-144692000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:144673400-144699600	Weak transcription	Fetal Stomach	stomach
6	chr6:144675600-144692000	Weak transcription	Dnd41	blood
7	chr6:144675800-144687000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:144676000-144685800	Weak transcription	Thymus	Thymus
9	chr6:144676000-144688200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:144681600-144686600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:144681800-144685800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:144681800-144699600	Weak transcription	Esophagus	oesophagus
13	chr6:144682000-144685800	Weak transcription	Placenta	Placenta
14	chr6:144682000-144685800	Weak transcription	Fetal Thymus	thymus
15	chr6:144682000-144691200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:144682000-144693600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:144682000-144698200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:144682200-144686200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:144682400-144686000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:144682400-144686600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:144682600-144685800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:144682600-144696600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:144682800-144685800	Weak transcription	Osteobl	bone
24	chr6:144683200-144688200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr6:144683400-144685800	Weak transcription	NHDF-Ad	bronchial
26	chr6:144683400-144690400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:144683600-144685800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:144683600-144685800	Weak transcription	Gastric	stomach
29	chr6:144683600-144686000	Weak transcription	Fetal Heart	heart
30	chr6:144683600-144691400	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:144683600-144691400	Weak transcription	Lung	lung
32	chr6:144683600-144699600	Weak transcription	Ovary	ovary
33	chr6:144683800-144685800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:144683800-144686000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:144683800-144686800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr6:144683800-144704600	Weak transcription	Aorta	Aorta
37	chr6:144684000-144685800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:144684000-144685800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:144684000-144685800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:144684000-144685800	Weak transcription	A549	lung
41	chr6:144684000-144686000	Weak transcription	Brain Anterior Caudate	brain
42	chr6:144684000-144687600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:144684000-144691800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:144684000-144693800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:144684000-144698200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:144684000-144698200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:144684200-144686200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:144684200-144686200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:144684200-144686200	Enhancers	Right Atrium	heart
50	chr6:144684400-144685800	Enhancers	H1 Cell Line	embryonic stem cell

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