Variant report

Variant	rs6904847
Chromosome Location	chr6:13412058-13412059
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13407840..13410506-chr6:13411726..13413779,2	K562	blood:

Variant related genes	Relation type
ENSG00000145990	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6916302	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6919467	0.91[AFR][1000 genomes]
rs6934350	0.91[AFR][1000 genomes]
rs7739234	0.91[AFR][1000 genomes]
rs7752876	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1034016	chr6:13248122-13418225	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13401800-13419000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:13405000-13418400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:13405000-13421800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:13408600-13412200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:13408600-13412400	Weak transcription	Fetal Lung	lung
6	chr6:13408600-13412400	Weak transcription	Spleen	Spleen
7	chr6:13408600-13412600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:13408600-13412800	Weak transcription	Gastric	stomach
9	chr6:13408600-13413000	Weak transcription	NHLF	lung
10	chr6:13408600-13413200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:13408600-13413200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:13408600-13413200	Weak transcription	Fetal Stomach	stomach
13	chr6:13408600-13413400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:13408600-13413400	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr6:13408600-13413400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:13408600-13413400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:13408600-13413600	Weak transcription	Placenta	Placenta
18	chr6:13408600-13413600	Weak transcription	Osteobl	bone
19	chr6:13408600-13414200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:13408600-13414600	Weak transcription	NHEK	skin
21	chr6:13408600-13415800	Enhancers	Liver	Liver
22	chr6:13408600-13422600	Weak transcription	HSMM	muscle
23	chr6:13408800-13412400	Weak transcription	Stomach Mucosa	stomach
24	chr6:13408800-13412800	Enhancers	HepG2	liver
25	chr6:13408800-13413200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:13408800-13413200	Weak transcription	Brain Anterior Caudate	brain
27	chr6:13408800-13413400	Weak transcription	NH-A	brain
28	chr6:13408800-13413600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:13408800-13413600	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr6:13408800-13414200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr6:13408800-13415200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:13408800-13419400	Weak transcription	Primary B cells from cord blood	blood
33	chr6:13408800-13420200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:13408800-13423000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:13409000-13412800	Weak transcription	Esophagus	oesophagus
36	chr6:13409000-13413200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:13409000-13413400	Weak transcription	HMEC	breast
38	chr6:13409200-13414600	Weak transcription	Hela-S3	cervix
39	chr6:13409600-13415400	Enhancers	Brain Angular Gyrus	brain
40	chr6:13410000-13415000	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr6:13410200-13415400	Enhancers	Brain Hippocampus Middle	brain
42	chr6:13410200-13415800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:13410400-13412200	Enhancers	Left Ventricle	heart
44	chr6:13410400-13412400	Enhancers	Brain Substantia Nigra	brain
45	chr6:13410400-13413800	Weak transcription	Fetal Brain Female	brain
46	chr6:13410400-13413800	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr6:13410400-13416000	Enhancers	Brain Cingulate Gyrus	brain
48	chr6:13410400-13416400	Enhancers	Right Atrium	heart
49	chr6:13410600-13415600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:13410800-13416000	Enhancers	Brain Inferior Temporal Lobe	brain

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