Variant report

Variant	rs6905472
Chromosome Location	chr6:45889665-45889666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:45889461-45889669	Hela-S3	cervix:	n/a	n/a
2	SMC3	chr6:45889415-45889915	Hela-S3	cervix:	n/a	n/a
3	MAX	chr6:45889470-45889901	Hela-S3	cervix:	n/a	chr6:45889853-45889862 chr6:45889853-45889862 chr6:45889854-45889861 chr6:45889852-45889862
4	MAX	chr6:45889659-45889954	K562	blood:	n/a	chr6:45889853-45889862 chr6:45889853-45889862 chr6:45889854-45889861 chr6:45889852-45889862

Variant related genes	Relation type
CLIC5	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3088356	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1021917	chr6:45879064-45898314	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45866600-45898400	Weak transcription	Colonic Mucosa	Colon
2	chr6:45881200-45908000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:45882200-45890800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:45882200-45891200	Weak transcription	Placenta	Placenta
5	chr6:45882400-45898400	Weak transcription	Fetal Intestine Large	intestine
6	chr6:45884600-45890400	Weak transcription	Fetal Kidney	kidney
7	chr6:45885200-45890400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:45885200-45891200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:45886800-45892000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:45886800-45910600	Weak transcription	Psoas Muscle	Psoas
11	chr6:45887000-45890400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:45887000-45892000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:45887400-45896600	Weak transcription	Fetal Intestine Small	intestine
14	chr6:45887800-45892800	Enhancers	GM12878-XiMat	blood
15	chr6:45888400-45890000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:45888400-45890000	Genic enhancers	Left Ventricle	heart
17	chr6:45888400-45890200	Enhancers	Fetal Muscle Leg	muscle
18	chr6:45888400-45892200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:45888400-45892800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:45888600-45890400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:45888600-45892400	Enhancers	HSMM	muscle
22	chr6:45889000-45890400	Weak transcription	Osteobl	bone
23	chr6:45889000-45891400	Weak transcription	NH-A	brain
24	chr6:45889000-45891800	Enhancers	Right Ventricle	heart
25	chr6:45889200-45891400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:45889200-45897200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:45889400-45890400	Enhancers	Fetal Stomach	stomach
28	chr6:45889400-45890600	Enhancers	Brain Substantia Nigra	brain
29	chr6:45889400-45891000	Enhancers	Fetal Lung	lung
30	chr6:45889400-45891400	Enhancers	Fetal Heart	heart
31	chr6:45889400-45892200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr6:45889400-45892200	Enhancers	NHDF-Ad	bronchial
33	chr6:45889400-45892400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:45889400-45892400	Enhancers	HSMMtube	muscle
35	chr6:45889600-45889800	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr6:45889600-45889800	Enhancers	Lung	lung
37	chr6:45889600-45890000	Enhancers	Fetal Muscle Trunk	muscle
38	chr6:45889600-45890000	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr6:45889600-45890000	Enhancers	Right Atrium	heart
40	chr6:45889600-45890000	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr6:45889600-45890800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:45889600-45891000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:45889600-45891000	Enhancers	Adipose Nuclei	Adipose
44	chr6:45889600-45891200	Enhancers	Hela-S3	cervix
45	chr6:45889600-45891800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:45889600-45891800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:45889600-45891800	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr6:45889600-45892200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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