Variant report

Variant	rs6905512
Chromosome Location	chr6:150205510-150205511
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:150205420-150205570	HCPEpiC	choroid plexus:	n/a	n/a
2	CTCF	chr6:150205480-150205630	NHEK	skin:	n/a	n/a
3	CTCF	chr6:150205480-150205630	HCT-116	colon:	n/a	n/a
4	CTCF	chr6:150205500-150205650	SAEC	small airway:	n/a	n/a
5	CTCF	chr6:150205485-150205722	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTCF	chr6:150205500-150205650	HRE	kidney:	n/a	n/a
7	RAD21	chr6:150205374-150205831	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ULBP2-3	chr6:150205461-150205556	NONHSAT115516
2	lnc-ULBP2-3	chr6:150205468-150205591	NONHSAT115517

No data

Variant related genes	Relation type
RAET1E-AS1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4478416	1.00[AMR][1000 genomes]
rs6910537	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150202800-150208600	Weak transcription	HSMMtube	muscle
2	chr6:150204200-150206800	Weak transcription	Hela-S3	cervix
3	chr6:150205000-150205800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:150205000-150205800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:150205000-150205800	Enhancers	Fetal Lung	lung
6	chr6:150205000-150206000	Enhancers	NHLF	lung
7	chr6:150205000-150210400	Enhancers	HMEC	breast
8	chr6:150205200-150205600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr6:150205200-150205600	Enhancers	Placenta	Placenta
10	chr6:150205200-150205600	Enhancers	NHDF-Ad	bronchial
11	chr6:150205200-150205800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:150205200-150205800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:150205200-150205800	Enhancers	Stomach Smooth Muscle	stomach
14	chr6:150205200-150205800	Bivalent Enhancer	K562	blood
15	chr6:150205200-150206000	Enhancers	Adipose Nuclei	Adipose
16	chr6:150205400-150205600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:150205400-150205600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:150205400-150205600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:150205400-150205600	Enhancers	Fetal Intestine Small	intestine
20	chr6:150205400-150205600	Bivalent Enhancer	Fetal Stomach	stomach
21	chr6:150205400-150205600	Flanking Active TSS	Right Atrium	heart
22	chr6:150205400-150205600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr6:150205400-150205600	Enhancers	NHEK	skin
24	chr6:150205400-150205800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
25	chr6:150205400-150205800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
26	chr6:150205400-150205800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:150205400-150205800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:150205400-150205800	Weak transcription	Esophagus	oesophagus
29	chr6:150205400-150205800	Enhancers	Fetal Muscle Trunk	muscle
30	chr6:150205400-150206000	Enhancers	Ovary	ovary

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