Variant report

Variant	rs6906657
Chromosome Location	chr6:71084229-71084230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:71083286..71085973-chr6:71086884..71089443,2	K562	blood:
2	chr6:71081307..71084390-chr6:71084685..71087958,4	K562	blood:
3	chr6:71078392..71080612-chr6:71082684..71085365,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs4084006	1.00[AMR][1000 genomes]
rs57247959	1.00[AMR][1000 genomes]
rs57627989	1.00[AMR][1000 genomes]
rs58125338	1.00[AMR][1000 genomes]
rs58605827	1.00[AMR][1000 genomes]
rs73472767	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472770	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472779	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472783	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73472786	1.00[AMR][1000 genomes]
rs73472788	1.00[AMR][1000 genomes]
rs73472800	1.00[AMR][1000 genomes]
rs73474931	1.00[AMR][1000 genomes]
rs73474939	1.00[AMR][1000 genomes]
rs73474948	1.00[AMR][1000 genomes]
rs73474957	1.00[AMR][1000 genomes]
rs73474960	1.00[AMR][1000 genomes]
rs73474964	1.00[AMR][1000 genomes]
rs73474983	1.00[AMR][1000 genomes]
rs73476884	1.00[AMR][1000 genomes]
rs73476888	1.00[AMR][1000 genomes]
rs73478818	1.00[AMR][1000 genomes]
rs73480278	1.00[AMR][1000 genomes]
rs73485161	1.00[AMR][1000 genomes]
rs73485167	1.00[AMR][1000 genomes]
rs73485171	1.00[AMR][1000 genomes]
rs73489065	1.00[AMR][1000 genomes]
rs73489072	1.00[AMR][1000 genomes]
rs73489087	1.00[AMR][1000 genomes]
rs7752725	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv1026229	chr6:71016272-71183503	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv886144	chr6:71018467-71214201	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1032876	chr6:71048428-71145166	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71074800-71085000	Weak transcription	K562	blood
2	chr6:71079200-71088400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:71079800-71084400	Weak transcription	A549	lung
4	chr6:71083800-71085600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:71083800-71085600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:71083800-71085600	Enhancers	HMEC	breast
7	chr6:71084000-71085200	Enhancers	NHLF	lung
8	chr6:71084200-71085600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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