Variant report

Variant	rs6906876
Chromosome Location	chr6:45516126-45516127
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:26979413..26980209-chr6:45515504..45516268,2	MCF-7	breast:
2	chr6:45514521..45516700-chr6:45519579..45523207,3	MCF-7	breast:
3	chr6:45506501..45508928-chr6:45515340..45517008,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154719	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6916727	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1019561	chr6:45485826-45535222	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv538214	chr6:45485826-45535222	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv491939	chr6:45508319-45526327	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45465000-45521600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:45489000-45521800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr6:45493200-45516200	Weak transcription	Hela-S3	cervix
4	chr6:45500600-45516600	Weak transcription	Small Intestine	intestine
5	chr6:45502000-45516200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:45506800-45523400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:45507400-45518800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:45508200-45517200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:45508200-45521600	Weak transcription	Primary T cells from cord blood	blood
10	chr6:45508200-45530600	Weak transcription	Psoas Muscle	Psoas
11	chr6:45508600-45522400	Weak transcription	Fetal Thymus	thymus
12	chr6:45508800-45516600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:45508800-45523400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:45512000-45516600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:45512000-45524000	Weak transcription	NHEK	skin
16	chr6:45512200-45517200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:45512400-45516600	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr6:45512400-45523400	Weak transcription	Brain Substantia Nigra	brain
19	chr6:45512400-45523400	Weak transcription	HMEC	breast
20	chr6:45512600-45519400	Weak transcription	Fetal Stomach	stomach
21	chr6:45512600-45521600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:45512800-45520200	Weak transcription	Ovary	ovary
23	chr6:45513400-45516600	Weak transcription	Lung	lung
24	chr6:45513800-45517200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr6:45514000-45517000	Weak transcription	Spleen	Spleen
26	chr6:45514200-45517200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:45514400-45516600	Strong transcription	Osteobl	bone
28	chr6:45514400-45517200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr6:45514400-45517800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:45514600-45517000	Strong transcription	Dnd41	blood
31	chr6:45515000-45516400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:45515000-45516600	Weak transcription	NHLF	lung
33	chr6:45515000-45521600	Weak transcription	Gastric	stomach
34	chr6:45515200-45516600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:45515400-45516600	Weak transcription	NHDF-Ad	bronchial
36	chr6:45515400-45518400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:45515400-45522400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr6:45515400-45523400	Weak transcription	HSMMtube	muscle
39	chr6:45515600-45516200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:45515600-45516400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:45515600-45516600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:45515600-45516800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:45515600-45517200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:45515600-45520600	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr6:45515600-45521200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:45515600-45521600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr6:45515600-45521600	Weak transcription	Esophagus	oesophagus
48	chr6:45515600-45521800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:45515600-45521800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr6:45515800-45516600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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