Variant report
| Variant | rs6907541 |
|---|---|
| Chromosome Location | chr6:92978539-92978540 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs16885691 | 0.86[EUR][1000 genomes] |
| rs16885705 | 0.86[EUR][1000 genomes] |
| rs1813395 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1813396 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1960691 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2009134 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3011814 | 0.86[EUR][1000 genomes] |
| rs3011816 | 0.86[EUR][1000 genomes] |
| rs3011818 | 0.86[EUR][1000 genomes] |
| rs603020 | 0.86[EUR][1000 genomes] |
| rs6906906 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6907961 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6911928 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6912173 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6912506 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6922283 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6942137 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73523936 | 0.86[EUR][1000 genomes] |
| rs73523938 | 0.86[EUR][1000 genomes] |
| rs7740373 | 0.86[EUR][1000 genomes] |
| rs987973 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017729 | chr6:92600697-93206779 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv528633 | chr6:92601636-93200633 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv1018503 | chr6:92622020-93173639 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv538362 | chr6:92622020-93173639 | Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 5 | nsv532329 | chr6:92723771-93176842 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 6 | nsv830730 | chr6:92880993-93051463 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 7 | nsv830731 | chr6:92963454-93207176 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:92978000-92979200 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 2 | chr6:92978400-92978800 | Enhancers | Hela-S3 | cervix |
