Variant report

Variant	rs6907635
Chromosome Location	chr6:80764168-80764169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2182852	0.83[AFR][1000 genomes]
rs239559	0.80[AFR][1000 genomes]
rs239565	0.80[AFR][1000 genomes]
rs240227	0.83[AFR][1000 genomes]
rs6912898	0.83[AFR][1000 genomes]
rs6925435	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv886307	chr6:80724666-80765111	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886308	chr6:80734870-80765111	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80751000-80764800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:80751000-80766200	Weak transcription	NHLF	lung
3	chr6:80753200-80765400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:80753200-80772200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:80753600-80765400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:80753800-80765800	Weak transcription	HSMM	muscle
7	chr6:80757600-80766000	Weak transcription	Dnd41	blood
8	chr6:80763400-80764200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr6:80763400-80764200	ZNF genes & repeats	Fetal Thymus	thymus
10	chr6:80763400-80764600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:80763400-80764800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
12	chr6:80763400-80764800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:80763400-80764800	Strong transcription	Thymus	Thymus
14	chr6:80763400-80765000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr6:80763400-80765400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
16	chr6:80763600-80764800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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