Variant report

Variant	rs6907972
Chromosome Location	chr6:145794135-145794136
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11155422	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110970	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28800626	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570687	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570688	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570690	0.85[AMR][1000 genomes]
rs6908027	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6915105	1.00[AMR][1000 genomes]
rs6925385	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6934750	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7746796	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7754527	0.85[AMR][1000 genomes]
rs9484997	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497318	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497320	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017166	chr6:145677071-145808448	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604838	chr6:145709371-145841146	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145768200-145803800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:145793400-145797600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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