Variant report

Variant	rs6908306
Chromosome Location	chr6:110643956-110643957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DDO-2	chr6:110643941-110644075	NONHSAT114418

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72934077	1.00[AFR][1000 genomes]
rs9487324	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1847660	chr6:110606987-110985314	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110628200-110651200	Weak transcription	Gastric	stomach
2	chr6:110632400-110646200	Weak transcription	Pancreas	Pancrea
3	chr6:110637200-110644200	Weak transcription	Ovary	ovary
4	chr6:110637400-110645000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:110637400-110645400	Weak transcription	Right Atrium	heart
6	chr6:110637400-110646200	Weak transcription	Aorta	Aorta
7	chr6:110638800-110646600	Weak transcription	Brain Angular Gyrus	brain
8	chr6:110639400-110644000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:110639400-110644000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:110640200-110647200	Enhancers	Fetal Brain Male	brain
11	chr6:110640200-110650800	Enhancers	Fetal Lung	lung
12	chr6:110640800-110646400	Weak transcription	Brain Substantia Nigra	brain
13	chr6:110641000-110644400	Enhancers	Stomach Smooth Muscle	stomach
14	chr6:110641000-110650800	Enhancers	Fetal Stomach	stomach
15	chr6:110641200-110644200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:110641200-110645400	Weak transcription	Lung	lung
17	chr6:110641400-110650800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:110642600-110644600	Enhancers	Fetal Brain Female	brain
19	chr6:110642600-110648200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr6:110642800-110645200	Enhancers	Colon Smooth Muscle	Colon
21	chr6:110642800-110650800	Enhancers	Rectal Smooth Muscle	rectum
22	chr6:110643000-110644600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:110643000-110644600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:110643000-110644800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr6:110643000-110644800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:110643000-110645000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:110643000-110645200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr6:110643000-110646200	Enhancers	Placenta	Placenta
29	chr6:110643200-110644000	Weak transcription	Brain Anterior Caudate	brain
30	chr6:110643200-110644200	Enhancers	Brain Hippocampus Middle	brain
31	chr6:110643200-110644400	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr6:110643200-110645000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:110643200-110645200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:110643200-110645600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:110643200-110647600	Enhancers	Brain Germinal Matrix	brain
36	chr6:110643400-110644000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:110643400-110644200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:110643400-110644800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:110643400-110645200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:110643600-110644000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:110643600-110644200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr6:110643600-110644600	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr6:110643600-110644800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:110643600-110645400	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr6:110643600-110650400	Enhancers	Fetal Kidney	kidney
46	chr6:110643800-110644000	Enhancers	Duodenum Mucosa	Duodenum
47	chr6:110643800-110644200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr6:110643800-110644200	Active TSS	Primary monocytes fromperipheralblood	blood
49	chr6:110643800-110644200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr6:110643800-110644200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links