Variant report

Variant	rs6909195
Chromosome Location	chr6:37941958-37941959
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1967149	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2201645	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4714117	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4714120	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv602956	chr6:37909084-37986489	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2761037	chr6:37930659-37966762	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37922800-37957600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:37922800-37958600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:37923600-37942200	Weak transcription	Aorta	Aorta
4	chr6:37923600-37947400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:37926800-37955000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:37927000-37942400	Weak transcription	Psoas Muscle	Psoas
7	chr6:37927200-37942400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:37929400-37942000	Weak transcription	Esophagus	oesophagus
9	chr6:37929400-37947800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:37929400-37953200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:37930200-37942200	Weak transcription	HepG2	liver
12	chr6:37934400-37949800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:37934800-37947400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:37935000-37942400	Weak transcription	HSMM	muscle
15	chr6:37935000-37942400	Weak transcription	NHDF-Ad	bronchial
16	chr6:37935000-37947000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:37935200-37942400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:37935200-37942400	Weak transcription	A549	lung
19	chr6:37935200-37947000	Weak transcription	NHEK	skin
20	chr6:37936600-37947400	Weak transcription	Left Ventricle	heart
21	chr6:37939400-37942600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:37939400-37942600	Weak transcription	Fetal Heart	heart
23	chr6:37939400-37947400	Weak transcription	Ovary	ovary
24	chr6:37939600-37942400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:37939800-37942000	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:37940000-37942400	Weak transcription	Liver	Liver
27	chr6:37940200-37942000	Weak transcription	Primary T cells from cord blood	blood
28	chr6:37940200-37942200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:37940200-37942200	Weak transcription	Adipose Nuclei	Adipose
30	chr6:37940200-37942200	Weak transcription	Spleen	Spleen
31	chr6:37940400-37942000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:37940400-37942200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:37940400-37948600	Weak transcription	HSMMtube	muscle
34	chr6:37940800-37942000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:37940800-37942200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:37941200-37942200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:37941200-37943200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:37941200-37945000	ZNF genes & repeats	GM12878-XiMat	blood
39	chr6:37941200-37947000	Weak transcription	Colon Smooth Muscle	Colon
40	chr6:37941600-37942000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:37941600-37942200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:37941600-37942200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr6:37941600-37942600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr6:37941600-37942600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:37941600-37943200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:37941800-37942200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr6:37941800-37942600	Weak transcription	Fetal Lung	lung
48	chr6:37941800-37942800	ZNF genes & repeats	Dnd41	blood
49	chr6:37941800-37943000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
50	chr6:37941800-37943200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links