Variant report

Variant	rs6909389
Chromosome Location	chr6:165426821-165426822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12525720	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12525727	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1322200	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1322202	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322203	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407369	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2025156	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2066897	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28539262	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs395044	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56817740	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58019489	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59012225	0.93[ASN][1000 genomes]
rs60762728	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60847295	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60940970	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61068180	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61272650	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6455986	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6918075	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6930938	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6931158	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6931320	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931708	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6937822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7768646	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7770804	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7770961	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9347058	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9347063	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9347973	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9347974	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9347975	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9347976	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9347978	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9347980	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9355527	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9355530	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9355531	0.88[EUR][1000 genomes]
rs9356331	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9356333	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9364785	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9365845	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9365846	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9365847	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9365848	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9365853	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9365854	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9365856	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9365857	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9365858	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs975009	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886926	chr6:165358270-165478051	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886927	chr6:165368163-165644276	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3370614	chr6:165424662-165428860	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165425000-165427400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:165425000-165427600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:165425400-165427200	Weak transcription	NH-A	brain
4	chr6:165426600-165427000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr6:165426600-165427000	Enhancers	Fetal Heart	heart
6	chr6:165426600-165427800	Enhancers	HSMMtube	muscle
7	chr6:165426600-165428000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:165426600-165428000	Enhancers	HSMM	muscle
9	chr6:165426600-165428600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:165426800-165427000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:165426800-165427800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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