Variant report

Variant	rs6909750
Chromosome Location	chr6:43756052-43756053
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:43755506..43757101-chr6:44044910..44047145,2	K562	blood:
2	chr6:43753292..43756479-chr6:44040332..44044488,5	K562	blood:
3	chr6:43754021..43756227-chr6:44044144..44045905,2	K562	blood:
4	chr6:43754883..43756846-chr6:43813491..43815753,2	K562	blood:
5	chr6:43754968..43757763-chr6:43917516..43919358,2	K562	blood:
6	chr6:43753782..43756373-chr6:43820577..43823164,2	K562	blood:
7	chr6:43662559..43664316-chr6:43754029..43756392,2	K562	blood:
8	chr6:43755139..43757632-chr6:43838958..43841806,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000231881	Chromatin interaction
ENSG00000237686	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9472122	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv1018626	chr6:43694649-43803732	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:43742600-43756400	Weak transcription	Primary T cells from cord blood	blood
2	chr6:43743000-43766400	Weak transcription	HUVEC	blood vessel
3	chr6:43744200-43757800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:43747800-43756400	Strong transcription	Fetal Stomach	stomach
5	chr6:43750600-43760400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:43750800-43757600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:43751200-43757600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:43753000-43765000	Weak transcription	Fetal Thymus	thymus
9	chr6:43753200-43756200	Weak transcription	Placenta	Placenta
10	chr6:43753400-43756200	Weak transcription	Spleen	Spleen
11	chr6:43753400-43756400	Weak transcription	Brain Anterior Caudate	brain
12	chr6:43753400-43756600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:43753400-43756800	Weak transcription	Aorta	Aorta
14	chr6:43753400-43757000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:43753400-43757200	Weak transcription	A549	lung
16	chr6:43753400-43757400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:43753400-43757800	Weak transcription	Ovary	ovary
18	chr6:43753400-43758200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:43753400-43761600	Weak transcription	Psoas Muscle	Psoas
20	chr6:43753400-43761800	Weak transcription	K562	blood
21	chr6:43753400-43767000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:43753400-43770400	Weak transcription	Fetal Lung	lung
23	chr6:43753400-43771200	Weak transcription	Small Intestine	intestine
24	chr6:43753600-43756200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:43753600-43756200	Weak transcription	HSMMtube	muscle
26	chr6:43753600-43756600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:43753600-43757000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:43753600-43758000	Weak transcription	Colonic Mucosa	Colon
29	chr6:43753600-43758400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:43753600-43760400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:43753600-43760400	Weak transcription	NHEK	skin
32	chr6:43753600-43760600	Weak transcription	Fetal Heart	heart
33	chr6:43753600-43760800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:43753600-43761000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr6:43753600-43762000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:43753600-43762200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:43753600-43764000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:43753600-43765600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr6:43753600-43765600	Weak transcription	Hela-S3	cervix
40	chr6:43753600-43765800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr6:43753600-43766000	Weak transcription	GM12878-XiMat	blood
42	chr6:43753800-43756400	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr6:43753800-43756600	Weak transcription	NH-A	brain
44	chr6:43753800-43757400	Weak transcription	HepG2	liver
45	chr6:43753800-43757600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr6:43754000-43760400	Weak transcription	HMEC	breast
47	chr6:43754400-43756200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:43754400-43765800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr6:43754400-43767000	Weak transcription	Liver	Liver
50	chr6:43754600-43756800	Weak transcription	Monocytes-CD14+_RO01746	blood

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