Variant report

Variant	rs6910405
Chromosome Location	chr6:25476646-25476647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:25462943..25465135-chr6:25475853..25477615,2	K562	blood:
2	chr6:25476412..25479313-chr6:25584126..25586131,2	MCF-7	breast:
3	chr6:25471228..25473427-chr6:25475104..25477874,2	K562	blood:
4	chr6:25476026..25478475-chr6:25483367..25486041,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1752776	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1980884	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs301396	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs399930	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs419563	0.95[ASN][1000 genomes]
rs435596	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs463121	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9467520	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv432856	chr6:25468825-25494666	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25436200-25481400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:25446800-25493600	Weak transcription	Left Ventricle	heart
3	chr6:25446800-25504400	Weak transcription	Primary B cells from cord blood	blood
4	chr6:25449400-25515800	Weak transcription	Lung	lung
5	chr6:25450400-25488400	Weak transcription	Fetal Intestine Large	intestine
6	chr6:25456400-25499200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:25456400-25515800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:25456400-25537000	Weak transcription	Esophagus	oesophagus
9	chr6:25462800-25477600	Weak transcription	Brain Anterior Caudate	brain
10	chr6:25463000-25490000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:25463200-25481200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:25463200-25532200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:25463800-25487400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:25464000-25498800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:25464200-25518400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:25464800-25490000	Weak transcription	Hela-S3	cervix
17	chr6:25465000-25482800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:25465400-25499000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:25466400-25516000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:25466800-25515800	Weak transcription	Fetal Stomach	stomach
21	chr6:25468400-25488400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:25469400-25486000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr6:25469800-25490200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr6:25470400-25477600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:25471200-25490200	Weak transcription	Small Intestine	intestine
26	chr6:25471600-25486200	Weak transcription	Adipose Nuclei	Adipose
27	chr6:25471600-25597200	Weak transcription	Gastric	stomach
28	chr6:25471800-25493200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:25472400-25477000	Weak transcription	Placenta	Placenta
30	chr6:25473400-25482800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr6:25473400-25490200	Weak transcription	Ovary	ovary
32	chr6:25473400-25495400	Weak transcription	Pancreas	Pancrea
33	chr6:25473600-25481600	Weak transcription	Fetal Kidney	kidney
34	chr6:25473600-25482800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:25473600-25483400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:25473600-25499600	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr6:25473600-25516000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:25474000-25484000	Weak transcription	Fetal Intestine Small	intestine
39	chr6:25474000-25484200	Weak transcription	Fetal Thymus	thymus
40	chr6:25474000-25490000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:25474000-25492200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:25474200-25476800	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:25474400-25490000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr6:25474600-25476800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:25475000-25488600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr6:25475600-25490200	Weak transcription	Primary B cells from peripheral blood	blood
47	chr6:25475800-25478000	Strong transcription	Primary T cells from cord blood	blood
48	chr6:25475800-25478000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr6:25475800-25481400	Weak transcription	Duodenum Mucosa	Duodenum
50	chr6:25476000-25476800	Strong transcription	Aorta	Aorta

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