Variant report

Variant	rs6910659
Chromosome Location	chr6:27249202-27249203
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2038044	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4559087	0.81[AMR][1000 genomes]
rs6909479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6913724	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6914521	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7744605	0.81[AMR][1000 genomes]
rs7746841	0.92[AMR][1000 genomes]
rs9368501	0.81[AMR][1000 genomes]
rs9379968	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv883505	chr6:27210614-27300580	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27247000-27249400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:27247000-27249400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:27247200-27249400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:27247200-27249400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:27247200-27249400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:27247200-27249400	Active TSS	A549	lung
7	chr6:27247200-27249400	Active TSS	Hela-S3	cervix
8	chr6:27247400-27249400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:27247600-27249400	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:27247600-27249400	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr6:27247600-27249400	Active TSS	GM12878-XiMat	blood
12	chr6:27247600-27249400	Active TSS	K562	blood
13	chr6:27247800-27249400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr6:27248000-27249400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:27248000-27249400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:27248600-27249400	Active TSS	NHLF	lung
17	chr6:27248600-27255800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:27249000-27249400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:27249000-27249400	Flanking Active TSS	HMEC	breast
20	chr6:27249000-27249400	Bivalent Enhancer	NHDF-Ad	bronchial
21	chr6:27249000-27249400	Bivalent Enhancer	Osteobl	bone
22	chr6:27249200-27249400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
23	chr6:27249200-27249400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:27249200-27249400	Flanking Active TSS	H9 Cell Line	embryonic stem cell
25	chr6:27249200-27249400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr6:27249200-27249400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr6:27249200-27249400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
28	chr6:27249200-27249400	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:27249200-27249400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:27249200-27249400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:27249200-27249400	Flanking Bivalent TSS/Enh	HepG2	liver
32	chr6:27249200-27249400	Enhancers	NHEK	skin

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