Variant report

Variant	rs691077
Chromosome Location	chr1:158191953-158191954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10489821	0.83[CEU][hapmap]
rs10489823	0.83[CEU][hapmap]
rs12040592	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12723141	1.00[CEU][hapmap]
rs1570699	0.81[CEU][hapmap]
rs1633141	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1633149	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1748383	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1748387	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2518477	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3087210	0.81[CEU][hapmap]
rs3087211	0.83[CEU][hapmap]
rs3087212	0.81[CEU][hapmap]
rs3118165	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs368130	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs374513	0.90[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap]
rs374686	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs377795	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs383688	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs384414	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs389495	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs393304	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs401904	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs402699	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs406558	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs407309	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs407980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs413557	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs429201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs434570	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs440862	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs448005	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs448556	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs449838	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs594364	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs607948	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs614164	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs620699	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs623215	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs691175	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs691314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs691551	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7530662	0.90[CEU][hapmap]
rs7548147	0.81[CEU][hapmap]
rs859003	0.83[CEU][hapmap]
rs859005	0.83[CEU][hapmap]
rs859008	0.81[CEU][hapmap]
rs859009	0.81[CEU][hapmap]
rs859010	0.80[CEU][hapmap]
rs859013	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv13585	chr1:158159222-158214160	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1814455	chr1:158160528-158200312	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv508626	chr1:158161932-158242158	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1845799	chr1:158175976-158230829	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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