Variant report

Variant	rs6911137
Chromosome Location	chr6:150286878-150286879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150285227..150287207-chr6:150324215..150327395,3	MCF-7	breast:
2	chr6:150286573..150288463-chr6:150317408..150319689,2	K562	blood:

Variant related genes	Relation type
ENSG00000218358	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6921329	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6937005	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv970175	chr6:150286661-150300237	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150284200-150287000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
2	chr6:150285200-150287000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:150285800-150287000	Bivalent/Poised TSS	Osteobl	bone
4	chr6:150286200-150287000	Bivalent Enhancer	Esophagus	oesophagus
5	chr6:150286200-150287000	Enhancers	Gastric	stomach
6	chr6:150286400-150287000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
7	chr6:150286400-150287000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:150286400-150287000	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
9	chr6:150286400-150287000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:150286400-150287000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:150286400-150287000	Enhancers	Lung	lung
12	chr6:150286600-150287000	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:150286600-150287000	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:150286600-150287000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:150286600-150287000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
16	chr6:150286600-150287000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
17	chr6:150286600-150287000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
18	chr6:150286600-150287000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
19	chr6:150286600-150287000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:150286600-150287000	Bivalent Enhancer	Brain Germinal Matrix	brain
21	chr6:150286600-150287000	Bivalent Enhancer	Fetal Thymus	thymus
22	chr6:150286600-150287000	Flanking Bivalent TSS/Enh	Spleen	Spleen
23	chr6:150286800-150287000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:150286800-150287000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:150286800-150287000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
26	chr6:150286800-150287000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
27	chr6:150286800-150287000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:150286800-150287000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:150286800-150287000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr6:150286800-150287000	Bivalent Enhancer	Rectal Smooth Muscle	rectum
31	chr6:150286800-150287000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
32	chr6:150286800-150287000	Enhancers	Dnd41	blood
33	chr6:150286800-150287200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
34	chr6:150286800-150287200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
35	chr6:150286800-150287200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:150286800-150287200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:150286800-150287200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:150286800-150287200	Bivalent Enhancer	Right Ventricle	heart
39	chr6:150286800-150287200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
40	chr6:150286800-150294800	Weak transcription	HSMMtube	muscle

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