Variant report

Variant	rs6911364
Chromosome Location	chr6:88198355-88198356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88181828..88184241-chr6:88195546..88199503,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164414	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2300906	0.87[YRI][hapmap]
rs2754247	0.85[YRI][hapmap]
rs2814712	0.87[YRI][hapmap]
rs3757370	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88183600-88212800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:88183600-88226000	Weak transcription	Gastric	stomach
3	chr6:88183800-88204200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:88183800-88210800	Weak transcription	Adipose Nuclei	Adipose
5	chr6:88183800-88211000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:88183800-88211000	Weak transcription	Brain Anterior Caudate	brain
7	chr6:88183800-88211000	Weak transcription	Thymus	Thymus
8	chr6:88183800-88211800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:88183800-88212000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:88183800-88212600	Weak transcription	Psoas Muscle	Psoas
11	chr6:88183800-88216400	Weak transcription	K562	blood
12	chr6:88183800-88219800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:88183800-88221000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:88183800-88221000	Weak transcription	Fetal Kidney	kidney
15	chr6:88183800-88225400	Weak transcription	Aorta	Aorta
16	chr6:88183800-88227400	Weak transcription	Right Ventricle	heart
17	chr6:88184000-88200800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:88184000-88202400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:88184000-88210800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:88184000-88211000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr6:88184000-88211000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr6:88184000-88218600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:88184000-88218600	Weak transcription	Brain Angular Gyrus	brain
24	chr6:88184000-88218800	Weak transcription	Brain Germinal Matrix	brain
25	chr6:88184000-88219800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:88184000-88221000	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:88184000-88224200	Weak transcription	Hela-S3	cervix
28	chr6:88184200-88211000	Weak transcription	NHDF-Ad	bronchial
29	chr6:88184200-88214800	Weak transcription	Fetal Brain Male	brain
30	chr6:88184400-88204600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:88184400-88211200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr6:88184400-88211800	Weak transcription	Brain Substantia Nigra	brain
33	chr6:88185800-88211400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr6:88186000-88211400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr6:88187800-88210800	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:88188400-88202800	Weak transcription	Fetal Brain Female	brain
37	chr6:88188400-88208200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:88188400-88211000	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr6:88188600-88221600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:88188800-88205400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr6:88188800-88210800	Weak transcription	Left Ventricle	heart
42	chr6:88189200-88211200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr6:88190200-88202600	Weak transcription	Osteobl	bone
44	chr6:88191200-88227400	Weak transcription	Spleen	Spleen
45	chr6:88192400-88210200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr6:88192800-88200600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr6:88193600-88214200	Weak transcription	HSMMtube	muscle
48	chr6:88193600-88227600	Weak transcription	Pancreas	Pancrea
49	chr6:88193800-88198600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr6:88193800-88201000	Weak transcription	Primary monocytes fromperipheralblood	blood

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