Variant report

Variant	rs6912098
Chromosome Location	chr6:88434519-88434520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:88410452..88412846-chr6:88432544..88434612,4	MCF-7	breast:
2	chr6:88409500..88413852-chr6:88432597..88436839,10	K562	blood:
3	chr6:88432902..88435557-chr6:88436899..88439269,3	MCF-7	breast:
4	chr6:88432657..88435151-chr6:88437657..88440381,2	K562	blood:
5	chr6:88410420..88413048-chr6:88432123..88435166,5	K562	blood:
6	chr6:88406148..88410116-chr6:88433158..88435018,3	K562	blood:
7	chr6:88410379..88413746-chr6:88430806..88436396,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135334	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6454642	1.00[AMR][1000 genomes]
rs7749571	1.00[AMR][1000 genomes]
rs9450791	1.00[AMR][1000 genomes]
rs9717400	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758068	chr6:88358988-88441473	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2759454	chr6:88358988-88441473	Strong transcription Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88420200-88436800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:88424600-88439200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:88427600-88439400	Weak transcription	Right Atrium	heart
4	chr6:88429400-88434800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:88429400-88439400	Weak transcription	Esophagus	oesophagus
6	chr6:88429600-88434600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:88432000-88435800	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:88432000-88435800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:88432200-88434800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:88432200-88435600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:88432200-88435600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:88432400-88435200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:88432400-88436000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:88432400-88436000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:88432400-88436400	Enhancers	Primary B cells from peripheral blood	blood
16	chr6:88432800-88434800	Enhancers	Thymus	Thymus
17	chr6:88432800-88435600	Enhancers	Primary T cells fromperipheralblood	blood
18	chr6:88432800-88437400	Enhancers	Fetal Thymus	thymus
19	chr6:88433000-88435600	Enhancers	A549	lung
20	chr6:88433400-88437400	Weak transcription	Placenta	Placenta
21	chr6:88433400-88437600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:88433400-88439200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:88433400-88439400	Weak transcription	Spleen	Spleen
24	chr6:88433400-88440400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:88433400-88441200	Weak transcription	Pancreas	Pancrea
26	chr6:88433600-88434800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr6:88433600-88435600	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr6:88433800-88434600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:88433800-88434800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:88433800-88434800	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr6:88433800-88434800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:88433800-88434800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:88433800-88434800	Weak transcription	Adipose Nuclei	Adipose
34	chr6:88433800-88434800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr6:88433800-88434800	Weak transcription	Psoas Muscle	Psoas
36	chr6:88433800-88435000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:88433800-88435200	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:88433800-88435200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:88433800-88435800	Enhancers	K562	blood
40	chr6:88433800-88437000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:88433800-88437200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:88433800-88437400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:88433800-88437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:88433800-88437400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:88433800-88437400	Weak transcription	Hela-S3	cervix
46	chr6:88433800-88437600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr6:88433800-88438400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:88433800-88438600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:88433800-88438600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:88433800-88439400	Weak transcription	Left Ventricle	heart

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