Variant report

Variant	rs6912247
Chromosome Location	chr6:139929419-139929420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:139926929..139929579-chr6:139947168..139949800,3	K562	blood:
2	chr6:139926812..139929737-chr6:139944252..139946929,2	K562	blood:
3	chr6:139695492..139698098-chr6:139928166..139930067,2	MCF-7	breast:
4	chr6:139921239..139922852-chr6:139929275..139931203,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17069061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17069069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6913466	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7756464	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139927400-139930600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:139927600-139930000	Enhancers	Fetal Kidney	kidney
3	chr6:139928000-139930000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:139928000-139930200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:139928000-139930400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:139928200-139930000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:139928200-139930000	Enhancers	Fetal Lung	lung
8	chr6:139928400-139930000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:139928400-139930000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:139928400-139930000	Enhancers	Fetal Stomach	stomach
11	chr6:139928400-139930200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:139928400-139931600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:139928600-139929800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:139928600-139929800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:139928600-139929800	Enhancers	K562	blood
16	chr6:139928600-139930000	Enhancers	Osteobl	bone
17	chr6:139928800-139929600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:139928800-139929600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:139928800-139929600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:139928800-139929800	Enhancers	HUVEC	blood vessel
21	chr6:139928800-139931600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:139929000-139930400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:139929000-139930800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:139929000-139932800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:139929200-139932200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr6:139929200-139932600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:139929200-139932800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:139929200-139932800	Weak transcription	Pancreas	Pancrea
29	chr6:139929200-139941000	Weak transcription	Aorta	Aorta
30	chr6:139929200-139944000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:139929400-139929800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:139929400-139932200	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links