Variant report

Variant	rs6912291
Chromosome Location	chr6:110386342-110386343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11153226	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11751590	0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs11757055	0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs12110744	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs12660119	0.81[ASN][1000 genomes]
rs12660791	0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs1462490	0.92[ASN][1000 genomes]
rs1462492	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1462493	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2002630	0.83[ASN][1000 genomes]
rs4257894	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs4299857	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4339500	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4509164	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4945850	0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs4945851	0.92[JPT][hapmap]
rs4947051	0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs4947058	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs60495849	0.82[ASN][1000 genomes]
rs61020234	0.83[ASN][1000 genomes]
rs6568634	0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs6913554	0.81[CHD][hapmap]
rs6915379	0.82[ASN][1000 genomes]
rs6918148	0.92[JPT][hapmap]
rs6925392	0.83[ASN][1000 genomes]
rs6927697	0.86[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs6927722	0.93[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6938106	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6938139	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6938653	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs73533834	0.92[ASN][1000 genomes]
rs73535810	0.82[ASN][1000 genomes]
rs7744828	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7747842	0.94[ASN][1000 genomes]
rs9372247	0.93[ASN][1000 genomes]
rs9372248	0.94[ASN][1000 genomes]
rs9374156	0.92[ASN][1000 genomes]
rs9400359	0.92[ASN][1000 genomes]
rs9400360	0.92[ASN][1000 genomes]
rs9481047	1.00[JPT][hapmap]
rs9481048	1.00[JPT][hapmap]
rs9487318	1.00[JPT][hapmap]
rs9487319	1.00[JPT][hapmap]
rs9487321	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1017551	chr6:110385054-110413225	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1023185	chr6:110386197-110416868	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110383200-110391000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:110384000-110386800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:110384000-110387600	Enhancers	Thymus	Thymus
4	chr6:110384400-110387200	Enhancers	Primary B cells from cord blood	blood
5	chr6:110384400-110387200	Enhancers	GM12878-XiMat	blood
6	chr6:110384600-110387600	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:110385200-110389000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:110385200-110389800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:110385200-110391200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:110385400-110388600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:110386200-110386400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:110386200-110386400	Enhancers	Colonic Mucosa	Colon
13	chr6:110386200-110387400	Bivalent Enhancer	Fetal Thymus	thymus

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