Variant report

Variant	rs6912335
Chromosome Location	chr6:34362530-34362531
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34361587..34363942-chr6:34380627..34382565,2	MCF-7	breast:
2	chr6:34180181..34181957-chr6:34360562..34363257,2	K562	blood:
3	chr6:34355541..34358575-chr6:34361768..34363900,3	K562	blood:
4	chr6:34202383..34217863-chr6:34357259..34364960,37	K562	blood:
5	chr6:34357967..34362826-chr6:34390808..34395314,8	K562	blood:
6	chr6:34213633..34219276-chr6:34358105..34363296,16	MCF-7	breast:
7	chr6:34287059..34289393-chr6:34361002..34363202,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PACSIN1-1	chr6:34359628-34362546	l_3174_chr6:34355416-34362546_76bGuttman_hLF

No data

No data

Variant related genes	Relation type
ENSG00000124614	Chromatin interaction
ENSG00000186577	Chromatin interaction
ENSG00000137309	Chromatin interaction
ENSG00000270800	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1150782	1.00[AMR][1000 genomes]
rs1759638	1.00[AMR][1000 genomes]
rs1776893	1.00[AMR][1000 genomes]
rs2797965	1.00[AMR][1000 genomes]
rs6899326	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34361000-34384800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:34361200-34382400	Weak transcription	Pancreas	Pancrea
3	chr6:34361200-34384800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:34361400-34378600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:34361800-34382400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:34362200-34382000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:34362400-34371400	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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