Variant report

Variant	rs6912857
Chromosome Location	chr6:160561740-160561741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:160534035..160535592-chr6:160560350..160562309,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3737088	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3798172	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798174	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs55984004	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57874120	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73025543	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73025559	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73025560	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73025566	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73025574	0.85[ASN][1000 genomes]
rs73784003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766568	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv35098	chr6:160422589-161070870	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2757197	chr6:160432331-161070870	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv818463	chr6:160435569-161025547	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv533582	chr6:160554084-160579554	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160539400-160580400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:160539600-160574600	Weak transcription	Adipose Nuclei	Adipose
3	chr6:160540200-160576200	Weak transcription	Right Ventricle	heart
4	chr6:160540400-160568800	Weak transcription	Esophagus	oesophagus
5	chr6:160554800-160582800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:160558400-160563800	Enhancers	A549	lung
7	chr6:160559000-160562000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:160559000-160573000	Weak transcription	Left Ventricle	heart
9	chr6:160559200-160564600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:160559200-160581600	Weak transcription	Gastric	stomach
11	chr6:160559200-160581600	Weak transcription	Pancreas	Pancrea
12	chr6:160559400-160562000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:160559400-160563000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:160559400-160563400	Enhancers	Colon Smooth Muscle	Colon
15	chr6:160559400-160563400	Enhancers	HepG2	liver
16	chr6:160559400-160563800	Enhancers	Rectal Smooth Muscle	rectum
17	chr6:160559600-160577400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:160559800-160561800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:160559800-160566000	Weak transcription	Brain Angular Gyrus	brain
20	chr6:160559800-160573800	Weak transcription	Fetal Intestine Small	intestine
21	chr6:160559800-160581600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:160560000-160562200	Enhancers	Aorta	Aorta
23	chr6:160560000-160562800	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:160560200-160562600	Weak transcription	Fetal Brain Male	brain
25	chr6:160560200-160580600	Weak transcription	Fetal Intestine Large	intestine
26	chr6:160560200-160581800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:160560400-160562000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:160560400-160563800	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:160560400-160564400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:160560400-160584600	Weak transcription	Spleen	Spleen
31	chr6:160560600-160561800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:160560600-160561800	Weak transcription	HSMM	muscle
33	chr6:160560600-160562000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:160560600-160562000	Weak transcription	HSMMtube	muscle
35	chr6:160560600-160562000	Weak transcription	NH-A	brain
36	chr6:160560600-160562200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:160560600-160562200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:160560600-160567600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:160560800-160562200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:160560800-160570800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:160560800-160583000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:160561000-160562000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:160561000-160562000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:160561000-160562000	Weak transcription	Hela-S3	cervix
45	chr6:160561000-160562800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:160561000-160563600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:160561000-160575000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr6:160561400-160562200	Enhancers	Psoas Muscle	Psoas
49	chr6:160561400-160562400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:160561400-160563600	Genic enhancers	Liver	Liver

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