Variant report

Variant	rs6913164
Chromosome Location	chr6:30497419-30497420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30496733..30498265-chr6:30509462..30511032,2	MCF-7	breast:
2	chr6:30497178..30499425-chr6:30580124..30582637,2	MCF-7	breast:
3	chr6:30495618..30498442-chr6:30501086..30503678,2	MCF-7	breast:
4	chr6:30456754..30458264-chr6:30496160..30498404,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204592	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4148249	0.86[AFR][1000 genomes]
rs57357873	0.86[AFR][1000 genomes]
rs7757145	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
4	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
5	nsv884077	chr6:30434900-30512163	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	esv3430377	chr6:30443802-30814426	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	967 gene(s)	inside rSNPs	diseases
7	nsv884086	chr6:30462084-30672757	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	798 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30486000-30500000	Weak transcription	Thymus	Thymus
2	chr6:30495000-30498800	Enhancers	Primary T cells fromperipheralblood	blood
3	chr6:30495000-30499000	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:30495000-30501200	Enhancers	Primary B cells from cord blood	blood
5	chr6:30495200-30498400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:30495200-30498400	Enhancers	Fetal Intestine Large	intestine
7	chr6:30495200-30498600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:30495200-30498600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:30495200-30498600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:30495200-30498800	Enhancers	HepG2	liver
11	chr6:30495400-30498000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:30495400-30498400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr6:30495400-30498600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:30495400-30498800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:30495400-30499000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:30495600-30498200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr6:30495600-30498400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:30495800-30499000	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr6:30496000-30498200	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:30496000-30498800	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr6:30496000-30499000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr6:30496000-30500000	Weak transcription	Right Atrium	heart
23	chr6:30496200-30497800	Weak transcription	Hela-S3	cervix
24	chr6:30496200-30498200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:30496200-30498200	Enhancers	HUVEC	blood vessel
26	chr6:30496200-30500000	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:30496200-30500000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:30496400-30499000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:30496400-30500000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:30496400-30500000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:30496400-30500000	Weak transcription	Stomach Mucosa	stomach
32	chr6:30496400-30500200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:30496400-30500200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:30496400-30500200	Weak transcription	NHEK	skin
35	chr6:30496400-30500200	Weak transcription	Osteobl	bone
36	chr6:30496400-30500400	Weak transcription	NHLF	lung
37	chr6:30496400-30513400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:30496800-30498200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr6:30496800-30498400	Enhancers	Primary T cells from cord blood	blood
40	chr6:30496800-30498400	Enhancers	Adipose Nuclei	Adipose
41	chr6:30497000-30497600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:30497000-30497600	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr6:30497000-30500400	Weak transcription	NHDF-Ad	bronchial
44	chr6:30497200-30497600	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr6:30497200-30498600	Enhancers	Primary hematopoietic stem cells	blood
46	chr6:30497400-30497600	Flanking Active TSS	GM12878-XiMat	blood
47	chr6:30497400-30498000	Enhancers	Fetal Intestine Small	intestine
48	chr6:30497400-30498200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr6:30497400-30498600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr6:30497400-30498600	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links