Variant report

Variant	rs6913952
Chromosome Location	chr6:37140146-37140147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr6:37138761-37140506	K562	blood:	n/a	chr6:37139357-37139372
2	MYC	chr6:37140088-37140253	K562	blood:	n/a	chr6:37140193-37140202 chr6:37140188-37140203 chr6:37140191-37140202 chr6:37140190-37140203 chr6:37140190-37140205 chr6:37140192-37140201 chr6:37140190-37140203 chr6:37140190-37140200 chr6:37140192-37140201 chr6:37140192-37140202 chr6:37140191-37140201 chr6:37140190-37140203
3	CEBPB	chr6:37139644-37140397	HepG2	liver:	n/a	chr6:37139803-37139816 chr6:37139804-37139815
4	CTCF	chr6:37140080-37140230	AG09309	skin:	n/a	chr6:37140123-37140133 chr6:37140115-37140136 chr6:37140122-37140135 chr6:37140120-37140138
5	CEBPB	chr6:37139628-37140573	MCF-7	breast:	n/a	chr6:37139803-37139816 chr6:37139804-37139815
6	CEBPB	chr6:37139528-37140465	K562	blood:	n/a	chr6:37139803-37139816 chr6:37139804-37139815
7	RCOR1	chr6:37139806-37140770	K562	blood:	n/a	n/a
8	MAX	chr6:37139865-37140451	SK-N-SH	brain:	n/a	chr6:37140193-37140202 chr6:37140188-37140203 chr6:37140191-37140202 chr6:37140190-37140203 chr6:37140190-37140205 chr6:37140192-37140201 chr6:37140190-37140203 chr6:37140190-37140200 chr6:37140192-37140201 chr6:37140192-37140202 chr6:37140191-37140201 chr6:37140190-37140203
9	MBD4	chr6:37139592-37140455	HepG2	liver:	n/a	n/a
10	MXI1	chr6:37136696-37140545	IMR90	lung:	n/a	n/a
11	CTCF	chr6:37139970-37140307	T-47D	breast:	n/a	chr6:37140123-37140133 chr6:37140115-37140136 chr6:37140122-37140135 chr6:37140120-37140138
12	ZNF143	chr6:37139831-37140319	GM12878	blood:	n/a	n/a
13	TCF7L2	chr6:37139599-37140236	HepG2	liver:	n/a	chr6:37139926-37139940 chr6:37139929-37139938 chr6:37139928-37139938
14	MAZ	chr6:37136662-37140555	K562	blood:	n/a	chr6:37136825-37136834 chr6:37140193-37140202 chr6:37137163-37137172 chr6:37140188-37140203 chr6:37140191-37140202 chr6:37140190-37140203 chr6:37136748-37136758 chr6:37140190-37140205 chr6:37140192-37140201 chr6:37140190-37140203 chr6:37140192-37140201 chr6:37140192-37140202 chr6:37140191-37140201 chr6:37140190-37140203 chr6:37138443-37138453
15	CTCF	chr6:37140060-37140210	GM12871	blood:	n/a	chr6:37140123-37140133 chr6:37140115-37140136 chr6:37140122-37140135 chr6:37140120-37140138
16	CTCF	chr6:37140008-37140243	SK-N-SH_RA	brain:	n/a	chr6:37140123-37140133 chr6:37140115-37140136 chr6:37140122-37140135 chr6:37140120-37140138
17	TBP	chr6:37139834-37140308	H1-hESC	embryonic stem cell:	n/a	n/a
18	NANOG	chr6:37139901-37140205	H1-hESC	embryonic stem cell:	n/a	n/a
19	RAD21	chr6:37139718-37140363	A549	lung:	n/a	chr6:37140121-37140134 chr6:37140122-37140132 chr6:37140118-37140137 chr6:37140120-37140132
20	RAD21	chr6:37139492-37140654	HCT-116	colon:	n/a	chr6:37140121-37140134 chr6:37140122-37140132 chr6:37140118-37140137 chr6:37140120-37140132
21	USF1	chr6:37139962-37140346	A549	lung:	n/a	chr6:37140190-37140201
22	NANOG	chr6:37139852-37140269	H1-hESC	embryonic stem cell:	n/a	n/a
23	RCOR1	chr6:37139803-37140371	HepG2	liver:	n/a	n/a
24	CTCF	chr6:37140080-37140230	WI-38	lung:	n/a	chr6:37140123-37140133 chr6:37140115-37140136 chr6:37140122-37140135 chr6:37140120-37140138
25	CHD2	chr6:37139920-37140483	K562	blood:	n/a	n/a
26	POLR2A	chr6:37136579-37146396	PBDE	blood:	n/a	n/a
27	POLR2A	chr6:37136637-37145170	Hela-S3	cervix:	n/a	n/a
28	RAD21	chr6:37139411-37140382	Hela-S3	cervix:	n/a	chr6:37140121-37140134 chr6:37140122-37140132 chr6:37140118-37140137 chr6:37140120-37140132
29	MAX	chr6:37139945-37140372	HUVEC	blood vessel:	n/a	chr6:37140193-37140202 chr6:37140188-37140203 chr6:37140191-37140202 chr6:37140190-37140203 chr6:37140190-37140205 chr6:37140192-37140201 chr6:37140190-37140203 chr6:37140190-37140200 chr6:37140192-37140201 chr6:37140192-37140202 chr6:37140191-37140201 chr6:37140190-37140203
30	TBP	chr6:37139699-37140420	K562	blood:	n/a	n/a
31	CTCF	chr6:37140020-37140170	GM12801	blood:	n/a	chr6:37140123-37140133 chr6:37140115-37140136 chr6:37140122-37140135 chr6:37140120-37140138
32	CTCF	chr6:37140039-37140244	HepG2	liver:	n/a	chr6:37140123-37140133 chr6:37140115-37140136 chr6:37140122-37140135 chr6:37140120-37140138
33	POLR2A	chr6:37139666-37140350	PFSK-1	brain:	n/a	n/a
34	MXI1	chr6:37136407-37140568	SK-N-SH	brain:	n/a	n/a
35	TBP	chr6:37139381-37140236	Hela-S3	cervix:	n/a	n/a
36	POLR2A	chr6:37136776-37146030	K562	blood:	n/a	n/a
37	UBTF	chr6:37136830-37142621	K562	blood:	n/a	n/a
38	YY1	chr6:37139836-37140200	ECC-1	luminal epithelium:	n/a	n/a
39	FOSL2	chr6:37139742-37140377	HepG2	liver:	n/a	n/a
40	MAX	chr6:37139808-37140535	MCF-7	breast:	n/a	chr6:37140193-37140202 chr6:37140188-37140203 chr6:37140191-37140202 chr6:37140190-37140203 chr6:37140190-37140205 chr6:37140192-37140201 chr6:37140190-37140203 chr6:37140190-37140200 chr6:37140192-37140201 chr6:37140192-37140202 chr6:37140191-37140201 chr6:37140190-37140203
41	RFX5	chr6:37139974-37140483	HepG2	liver:	n/a	n/a
42	CTCF	chr6:37140022-37140293	A549	lung:	n/a	chr6:37140123-37140133 chr6:37140115-37140136 chr6:37140122-37140135 chr6:37140120-37140138
43	POLR2A	chr6:37135827-37146353	K562	blood:	n/a	n/a
44	USF2	chr6:37139989-37140407	H1-hESC	embryonic stem cell:	n/a	chr6:37140190-37140201
45	CTCF	chr6:37139991-37140278	GM19240	blood:	n/a	chr6:37140123-37140133 chr6:37140115-37140136 chr6:37140122-37140135 chr6:37140120-37140138
46	FOS	chr6:37139872-37140214	MCF10A-Er-Src	breast:	n/a	n/a
47	FOXA1	chr6:37139680-37140486	HepG2	liver:	n/a	chr6:37140177-37140192 chr6:37140018-37140030
48	SMC3	chr6:37139669-37140437	HepG2	liver:	n/a	chr6:37140122-37140136 chr6:37139751-37139758 chr6:37140122-37140132
49	USF1	chr6:37139963-37140577	SK-N-SH	brain:	n/a	chr6:37140190-37140201
50	CTCF	chr6:37140028-37140257	GM13977	blood:	n/a	chr6:37140123-37140133 chr6:37140115-37140136 chr6:37140122-37140135 chr6:37140120-37140138

No.	Distal block	Cell Line	Cell type
1	chr6:36989224..36990150-chr6:37139673..37140213,2	MCF-7	breast:
2	chr6:37123155..37124101-chr6:37139191..37140164,2	K562	blood:
3	chr6:37024374..37025015-chr6:37139637..37140216,2	MCF-7	breast:
4	chr6:36952261..36954341-chr6:37137585..37140214,3	K562	blood:
5	chr6:36989098..36990112-chr6:37139646..37140588,5	K562	blood:
6	chr6:37138226..37140193-chr6:37227015..37228524,2	K562	blood:

Variant related genes	Relation type
PIM1	TF binding region
ENSG00000137409	Chromatin interaction
ENSG00000146192	Chromatin interaction

rs_ID	r²[population]
rs57187090	0.87[AFR][1000 genomes]
rs59075959	0.81[AFR][1000 genomes]
rs73415823	0.87[AFR][1000 genomes]
rs73415838	1.00[AFR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37136600-37140200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr6:37136600-37140200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:37136600-37140200	Active TSS	Aorta	Aorta
4	chr6:37136600-37140600	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr6:37136800-37140200	Active TSS	H1 Cell Line	embryonic stem cell
6	chr6:37136800-37140200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:37136800-37140200	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr6:37136800-37140200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:37136800-37140200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:37136800-37140200	Active TSS	Esophagus	oesophagus
11	chr6:37136800-37140200	Active TSS	Left Ventricle	heart
12	chr6:37136800-37140200	Active TSS	Lung	lung
13	chr6:37136800-37140400	Active TSS	Psoas Muscle	Psoas
14	chr6:37136800-37140800	Active TSS	Ovary	ovary
15	chr6:37137000-37140200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:37137000-37140200	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr6:37137000-37140200	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr6:37137000-37140200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:37137000-37140200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:37137000-37140200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:37137000-37140200	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr6:37137000-37140200	Active TSS	Liver	Liver
23	chr6:37137000-37140200	Active TSS	Brain Anterior Caudate	brain
24	chr6:37137000-37140200	Active TSS	Brain Inferior Temporal Lobe	brain
25	chr6:37137000-37140200	Active TSS	Colon Smooth Muscle	Colon
26	chr6:37137000-37140200	Active TSS	Fetal Kidney	kidney
27	chr6:37137000-37140200	Active TSS	Rectal Smooth Muscle	rectum
28	chr6:37137000-37140200	Active TSS	NH-A	brain
29	chr6:37137000-37140200	Active TSS	NHDF-Ad	bronchial
30	chr6:37137000-37140400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:37137000-37140400	Active TSS	Placenta Amnion	Placenta Amnion
32	chr6:37137000-37141200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:37137200-37140200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:37137200-37140200	Active TSS	Primary T cells from cord blood	blood
35	chr6:37137200-37140200	Active TSS	Primary T helper naive cells from peripheral blood	blood
36	chr6:37137200-37140200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:37137200-37140200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr6:37137200-37140200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:37137200-37140200	Active TSS	Fetal Brain Female	brain
40	chr6:37137200-37140200	Active TSS	Stomach Mucosa	stomach
41	chr6:37137200-37140200	Active TSS	Hela-S3	cervix
42	chr6:37137200-37140600	Active TSS	HSMMtube	muscle
43	chr6:37137200-37141000	Active TSS	Small Intestine	intestine
44	chr6:37137400-37140400	Active TSS	Thymus	Thymus
45	chr6:37138000-37143200	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
46	chr6:37138200-37140200	Flanking Active TSS	Primary B cells from cord blood	blood
47	chr6:37138200-37140200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr6:37138200-37140200	Active TSS	Fetal Brain Male	brain
49	chr6:37138200-37140200	Active TSS	Right Atrium	heart
50	chr6:37138200-37142000	Flanking Active TSS	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links