Variant report
| Variant | rs6913978 |
|---|---|
| Chromosome Location | chr6:49783943-49783944 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:49782583..49784882-chr6:49793108..49795301,2 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CRISP1-1 | chr6:49783206-49784519 | XLOC_005740 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs12205447 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[YRI][hapmap] |
| rs16879746 | 0.81[JPT][hapmap] |
| rs1970456 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs28372930 | 0.81[ASN][1000 genomes] |
| rs3799689 | 0.87[JPT][hapmap] |
| rs3799692 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6902472 | 0.81[JPT][hapmap] |
| rs7450124 | 0.83[JPT][hapmap] |
| rs7743320 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs780558 | 0.86[JPT][hapmap] |
| rs9473663 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 3 | esv3434423 | chr6:49771042-49788886 | Weak transcription Enhancers ZNF genes & repeats Strong transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
