Variant report

Variant	rs6914244
Chromosome Location	chr6:88304762-88304763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:88301564..88305247-chr6:88408310..88410665,3	K562	blood:
2	chr6:88303345..88305306-chr6:88319508..88322473,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1075665	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11970493	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12529993	0.92[ASN][1000 genomes]
rs12530371	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34513746	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4132446	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4354121	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707378	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4707385	0.83[EUR][1000 genomes]
rs58305152	0.91[ASN][1000 genomes]
rs6454634	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759462	0.80[ASN][1000 genomes]
rs9294384	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9444511	0.80[ASN][1000 genomes]
rs9444513	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9444514	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9444516	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9444521	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9444531	0.86[EUR][1000 genomes]
rs9444534	0.80[EUR][1000 genomes]
rs9450728	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9450729	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9450734	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9450735	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9450740	0.90[ASN][1000 genomes]
rs9450741	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9450743	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9450749	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9450750	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9450751	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9450756	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9450760	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9450763	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv538354	chr6:88273858-88311606	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6914244	SLC35A1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88300400-88320800	Weak transcription	Spleen	Spleen
2	chr6:88300400-88323400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:88300600-88315800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:88300600-88320000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:88300600-88321800	Weak transcription	Lung	lung
6	chr6:88300600-88323400	Weak transcription	Gastric	stomach
7	chr6:88300600-88391200	Weak transcription	Colonic Mucosa	Colon
8	chr6:88300800-88304800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:88300800-88311600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:88300800-88320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:88300800-88323600	Weak transcription	Aorta	Aorta
12	chr6:88301000-88304800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:88301000-88304800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:88301000-88304800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:88301000-88304800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:88301000-88304800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:88301000-88304800	Weak transcription	Fetal Kidney	kidney
18	chr6:88301000-88304800	Weak transcription	Psoas Muscle	Psoas
19	chr6:88301000-88305200	Weak transcription	Fetal Stomach	stomach
20	chr6:88301000-88310000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr6:88301000-88311600	Weak transcription	Brain Substantia Nigra	brain
22	chr6:88301000-88313800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:88301000-88315600	Weak transcription	NH-A	brain
24	chr6:88301000-88316400	Weak transcription	Pancreas	Pancrea
25	chr6:88301000-88321000	Weak transcription	Brain Angular Gyrus	brain
26	chr6:88301000-88321000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:88301000-88323600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:88301000-88330200	Weak transcription	Right Ventricle	heart
29	chr6:88301000-88347200	Weak transcription	Small Intestine	intestine
30	chr6:88301200-88304800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:88301200-88304800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:88301200-88304800	Weak transcription	Primary T cells from cord blood	blood
33	chr6:88301200-88304800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:88301200-88304800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr6:88301200-88304800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:88301200-88304800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr6:88301200-88305000	Weak transcription	HUVEC	blood vessel
38	chr6:88301200-88305600	Weak transcription	Fetal Intestine Small	intestine
39	chr6:88301200-88306400	Weak transcription	HSMM	muscle
40	chr6:88301200-88308400	Weak transcription	Fetal Brain Male	brain
41	chr6:88301200-88313000	Weak transcription	NHDF-Ad	bronchial
42	chr6:88301200-88313200	Weak transcription	Hela-S3	cervix
43	chr6:88301200-88314000	Weak transcription	HMEC	breast
44	chr6:88301200-88316200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr6:88301200-88320800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr6:88301200-88320800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:88301200-88323400	Weak transcription	Thymus	Thymus
48	chr6:88301200-88385000	Weak transcription	Colon Smooth Muscle	Colon
49	chr6:88301400-88304800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:88301400-88304800	Weak transcription	NHEK	skin

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