Variant report

Variant	rs6915066
Chromosome Location	chr6:56301453-56301454
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr6:56300894-56301467	MCF10A-Er-Src	breast:	n/a	chr6:56301173-56301181

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56238499..56241201-chr6:56301046..56303726,2	MCF-7	breast:
2	chr6:56300576..56302403-chr6:56306257..56307780,2	MCF-7	breast:
3	chr6:56298845..56301782-chr6:56308570..56311442,2	MCF-7	breast:
4	chr6:56249469..56251533-chr6:56299828..56301896,2	MCF-7	breast:
5	chr6:56299637..56301821-chr6:56302113..56303860,2	K562	blood:
6	chr6:56252910..56254417-chr6:56300788..56302600,2	MCF-7	breast:
7	chr6:56246501..56248507-chr6:56300256..56301859,2	MCF-7	breast:
8	chr6:56233493..56236499-chr6:56300077..56302694,3	MCF-7	breast:
9	chr6:56298843..56301958-chr6:56302177..56305032,4	MCF-7	breast:
10	chr6:56300059..56302914-chr6:56304069..56306007,3	MCF-7	breast:
11	chr6:56246730..56249107-chr6:56300637..56303346,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10484787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323318	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1323319	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209037	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2224749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4715633	1.00[CHB][hapmap]
rs56199254	1.00[ASN][1000 genomes]
rs6903211	0.85[CEU][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6917087	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6941846	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73465822	1.00[EUR][1000 genomes]
rs73745839	1.00[ASN][1000 genomes]
rs9475698	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56300200-56303000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:56300200-56303600	Enhancers	Liver	Liver
3	chr6:56300600-56302000	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:56300600-56303000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:56301000-56302000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:56301000-56302000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:56301000-56304400	Weak transcription	Fetal Intestine Large	intestine
8	chr6:56301000-56305200	Weak transcription	Pancreas	Pancrea
9	chr6:56301200-56301600	Weak transcription	Hela-S3	cervix
10	chr6:56301200-56302000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:56301400-56301800	Weak transcription	HMEC	breast
12	chr6:56301400-56301800	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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