Variant report

Variant	rs6915214
Chromosome Location	chr6:147172730-147172731
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:147172671-147173373	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
STXBP5-AS1	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1324679	0.89[CEU][hapmap]
rs1324684	0.81[CHB][hapmap]
rs1575612	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1924692	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1966195	0.82[CHB][hapmap]
rs2003318	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6927572	0.89[CEU][hapmap]
rs9399586	0.85[CEU][hapmap]
rs9403822	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830838	chr6:147090745-147274669	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147163200-147178800	Weak transcription	Right Atrium	heart
2	chr6:147163400-147178800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:147171200-147173800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:147171400-147173400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:147171400-147173600	Enhancers	NH-A	brain
6	chr6:147171400-147173600	Enhancers	NHDF-Ad	bronchial
7	chr6:147171600-147173800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:147171800-147172800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:147171800-147173800	Enhancers	NHEK	skin
10	chr6:147172000-147173000	Weak transcription	K562	blood
11	chr6:147172000-147173200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:147172000-147178400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:147172200-147173800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:147172200-147178800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:147172400-147173800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:147172400-147176800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:147172600-147172800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:147172600-147173400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:147172600-147173400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:147172600-147173400	Enhancers	Osteobl	bone
21	chr6:147172600-147173600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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