Variant report

Variant	rs6915431
Chromosome Location	chr6:30073199-30073200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11964542	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11967305	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11967533	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11970651	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17187896	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188050	0.92[ASN][1000 genomes]
rs17193809	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17194209	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55809494	0.81[AMR][1000 genomes]
rs59387046	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61023635	0.85[ASN][1000 genomes]
rs6915823	0.86[ASN][1000 genomes]
rs73420413	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30070000-30075400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:30071400-30073200	Enhancers	Hela-S3	cervix
3	chr6:30071600-30079200	Weak transcription	Gastric	stomach
4	chr6:30071800-30073400	Weak transcription	HMEC	breast
5	chr6:30071800-30073800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:30071800-30074000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:30071800-30074800	Weak transcription	Spleen	Spleen
8	chr6:30072000-30074000	Weak transcription	Stomach Mucosa	stomach
9	chr6:30072200-30078000	Weak transcription	Colonic Mucosa	Colon
10	chr6:30073000-30073200	Enhancers	Fetal Intestine Small	intestine
11	chr6:30073000-30073200	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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