Variant report

Variant	rs6915811
Chromosome Location	chr6:11198678-11198679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11197881..11200138-chr6:11201320..11203680,2	K562	blood:
2	chr6:11192984..11196661-chr6:11197832..11200320,3	MCF-7	breast:
3	chr6:11197493..11200396-chr6:11205565..11209405,4	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12215094	0.87[CHB][hapmap];0.84[CHD][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs2034	0.92[ASN][1000 genomes]
rs3756966	0.87[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs3778169	0.87[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs3798733	0.87[CHB][hapmap];0.89[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs3798734	0.87[CHB][hapmap];0.89[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs3798736	0.87[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs3798740	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3798743	0.87[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs6912916	0.87[CHB][hapmap];0.83[CHD][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs6928520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6937575	0.87[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs726230	0.87[CHB][hapmap];0.89[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs9295813	0.87[CHB][hapmap];0.89[CHD][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11179000-11202200	Weak transcription	Brain Substantia Nigra	brain
2	chr6:11183000-11199000	Strong transcription	Primary B cells from peripheral blood	blood
3	chr6:11185800-11202600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:11186800-11200400	Weak transcription	HMEC	breast
5	chr6:11190400-11198800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:11190800-11201400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:11191000-11199000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:11191000-11200200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:11191200-11200400	Weak transcription	NHEK	skin
10	chr6:11191800-11201400	Weak transcription	Esophagus	oesophagus
11	chr6:11192000-11199000	Weak transcription	Pancreas	Pancrea
12	chr6:11192000-11202600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:11192200-11198800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:11192400-11199000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:11192600-11199000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:11192800-11202800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:11192800-11207000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:11192800-11207200	Weak transcription	Liver	Liver
19	chr6:11193000-11199000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr6:11194000-11199600	Enhancers	Fetal Heart	heart
21	chr6:11194000-11200200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:11194000-11200200	Weak transcription	Fetal Intestine Large	intestine
23	chr6:11194000-11200400	Weak transcription	Colonic Mucosa	Colon
24	chr6:11194000-11202200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:11194000-11202600	Weak transcription	Brain Germinal Matrix	brain
26	chr6:11194200-11199200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:11194400-11199600	Enhancers	Adipose Nuclei	Adipose
28	chr6:11194600-11198800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:11194600-11199000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:11194800-11201000	Enhancers	Fetal Thymus	thymus
31	chr6:11195000-11203200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr6:11195400-11201400	Weak transcription	Gastric	stomach
33	chr6:11195400-11203200	Enhancers	Thymus	Thymus
34	chr6:11195400-11207200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:11195600-11199400	Enhancers	HUVEC	blood vessel
36	chr6:11195600-11202200	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr6:11195600-11207400	Weak transcription	Colon Smooth Muscle	Colon
38	chr6:11196000-11202000	Weak transcription	Stomach Mucosa	stomach
39	chr6:11196000-11203000	Weak transcription	Psoas Muscle	Psoas
40	chr6:11196200-11201600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:11196400-11198800	Enhancers	H9 Cell Line	embryonic stem cell
42	chr6:11196600-11198800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:11196600-11198800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:11196600-11199200	Genic enhancers	Lung	lung
45	chr6:11196600-11199400	Enhancers	Fetal Brain Male	brain
46	chr6:11196600-11201800	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr6:11196800-11198800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr6:11196800-11201800	Genic enhancers	Left Ventricle	heart
49	chr6:11197000-11199000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:11197000-11199200	Genic enhancers	Right Ventricle	heart

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