Variant report

Variant	rs6915941
Chromosome Location	chr6:146877380-146877381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146869556..146872424-chr6:146874913..146877464,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3804288	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3804289	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6570768	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6918907	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6939108	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9399580	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv886749	chr6:146679735-147123699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146865800-146877400	Weak transcription	Placenta	Placenta
2	chr6:146865800-146878200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:146866400-146881800	Weak transcription	Brain Germinal Matrix	brain
4	chr6:146866600-146877800	Weak transcription	Gastric	stomach
5	chr6:146866600-146877800	Weak transcription	Lung	lung
6	chr6:146866600-146883800	Weak transcription	Small Intestine	intestine
7	chr6:146866600-146885800	Weak transcription	Pancreas	Pancrea
8	chr6:146866800-146877600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:146866800-146878000	Weak transcription	Brain Substantia Nigra	brain
10	chr6:146867000-146877800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:146867000-146880600	Weak transcription	Right Ventricle	heart
12	chr6:146867200-146877800	Weak transcription	Primary T cells from cord blood	blood
13	chr6:146867400-146877400	Weak transcription	Fetal Intestine Small	intestine
14	chr6:146871800-146877800	Weak transcription	Fetal Stomach	stomach
15	chr6:146872400-146878200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:146872800-146878000	Weak transcription	A549	lung
17	chr6:146872800-146878200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:146873000-146877600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:146873800-146878200	Weak transcription	Stomach Mucosa	stomach
20	chr6:146876000-146878200	Weak transcription	Hela-S3	cervix
21	chr6:146876400-146878000	Weak transcription	Aorta	Aorta
22	chr6:146876400-146878000	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:146876400-146878000	Weak transcription	Ovary	ovary
24	chr6:146876400-146878000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:146876400-146878000	Weak transcription	Thymus	Thymus
26	chr6:146876400-146878000	Weak transcription	Spleen	Spleen
27	chr6:146876400-146878200	Weak transcription	Left Ventricle	heart
28	chr6:146876400-146878400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:146876400-146883600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:146876400-146891400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:146876600-146878200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:146876600-146878200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:146876600-146878200	Weak transcription	Fetal Kidney	kidney
34	chr6:146876600-146878200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr6:146876600-146878200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr6:146876600-146878200	Weak transcription	HSMMtube	muscle
37	chr6:146876600-146878400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:146876600-146878400	Weak transcription	Fetal Muscle Leg	muscle
39	chr6:146876600-146880600	Weak transcription	Colon Smooth Muscle	Colon
40	chr6:146876600-146880800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:146876600-146881000	Weak transcription	HMEC	breast
42	chr6:146876600-146891200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:146876800-146878400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:146876800-146878400	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:146876800-146878400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr6:146876800-146878400	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:146876800-146878400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:146876800-146878400	Weak transcription	Fetal Lung	lung
49	chr6:146876800-146878400	Weak transcription	Fetal Thymus	thymus
50	chr6:146876800-146878400	Weak transcription	Rectal Mucosa Donor 31	rectum

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